From 199ec6dd4c70c733edd200e61d6470dedcf0da85 Mon Sep 17 00:00:00 2001 From: John Chilton Date: Tue, 24 Oct 2017 09:26:44 -0400 Subject: [PATCH] Condense several 17.09 release notes items. --- doc/source/releases/17.09.rst | 83 ++++++++++------------------------- 1 file changed, 24 insertions(+), 59 deletions(-) diff --git a/doc/source/releases/17.09.rst b/doc/source/releases/17.09.rst index 96740bc4576..41b4e08d3d4 100644 --- a/doc/source/releases/17.09.rst +++ b/doc/source/releases/17.09.rst @@ -112,9 +112,10 @@ Enhancements * Implement a "plain" bootstrap theme for the UX (thanks to `@erasche `__). `Pull Request 4470`_ -* Add Selenium tests for the "saved histories" and "published histories" +* Add Selenium tests for the "saved histories", "published histories", and + "custom builds" (thanks to `@anatskiy `__). - `Pull Request 4587`_, `Pull Request 4502`_ + `Pull Request 4587`_, `Pull Request 4502`_, `Pull Request 4641`_, * Dozens of Selenium functional test enhancements and fixes `Pull Request 3993`_, `Pull Request 4523`_, `Pull Request 4524`_, `Pull Request 4549`_, `Pull Request 4588`_, `Pull Request 4589`_, `Pull Request 4647`_, @@ -168,15 +169,18 @@ Enhancements * Add the ability to control job conf plugin loading from environment variables. `Pull Request 4154`_ -* Remove saved pages grid mako - `Pull Request 4157`_ +* Replace various mako templates with client side JavaScript rendering. + `Pull Request 4157`_, `Pull Request 4167`_, `Pull Request 4169`_, + `Pull Request 4201`_, `Pull Request 4311`_, `Pull Request 4377`_, + `Pull Request 4411`_, `Pull Request 4334`_ +* Related to the above mako transition, rework various "grid" rendering code + to do more on the client side as well. + `Pull Request 4302`_, `Pull Request 4291`_, `Pull Request 4293`_, + `Pull Request 4385`_, `Pull Request 4405`_, + `Pull Request 4449`_, `Pull Request 4263`_, `Pull Request 4341`_, + `Pull Request 4163`_, `Pull Request 4101`_ * Set content type to application/json for JSON text types. `Pull Request 4160`_ -* Remove histories grid mako - `Pull Request 4167`_ -* Mako to JavaScript views for Workflow's Run and Import actions - (thanks to `@bgruening `__). - `Pull Request 4169`_ * Improved Mulled Containers `Pull Request 4173`_ * Allow Galaxy to use cached mulled containers for Singularity. @@ -189,8 +193,6 @@ Enhancements * deals with .xls older file extension (thanks to `@FredericBGA `__). `Pull Request 4200`_ -* Remove makos for published list grids - `Pull Request 4201`_ * add dev requirement `Pull Request 4008`_ * Improve search plugin @@ -247,19 +249,13 @@ Enhancements * Local network access restrictions (thanks to `@erasche `__). `Pull Request 4289`_ -* Grid published histories - `Pull Request 4291`_ * Enhancement for Phyloviz viz plugin (thanks to `@bgruening `__). `Pull Request 4292`_ -* Use dictionary endpoints for item selection grids in page editor - `Pull Request 4293`_ * Submitting the galaxy jobs as a predefined system user: using 'real_system_username' (thanks to `@ashvark `__). `Pull Request 4294`_ -* Trackster selection grids and feature fixes - `Pull Request 4302`_ * Update Japanese translation (thanks to `@manabuishii `__). `Pull Request 4304`_ @@ -272,8 +268,6 @@ Enhancements * Support Localization Scratchbook (thanks to `@manabuishii `__). `Pull Request 4307`_ -* Removes saved visualizations grid mako - `Pull Request 4311`_ * Allow import of history archives via simple file upload (thanks to `@mvdbeek `__). `Pull Request 4326`_ @@ -284,21 +278,14 @@ Enhancements (thanks to `@VJalili `__). `Pull Request 4342`_ * CSRF protection for login, logout, and user registration. - `Pull Request 4365`_ -* Implement default_identifier_source for outputs and sort input keys by - default + `Pull Request 4365`_, `Pull Request 4710`_ +* Implement ``default_identifier_source`` for tool collection outputs and sort + input keys by default (thanks to `@mvdbeek `__). `Pull Request 4368`_ -* Allow removal of dataset tags in workflows - (thanks to `@mvdbeek `__). - `Pull Request 4369`_ * Galactic Radio Telescope Update (thanks to `@erasche `__). `Pull Request 4376`_ -* Remove makos of admin user grid forms - `Pull Request 4377`_ -* Admin grid roles revision - `Pull Request 4385`_ * Show minimum required galaxy version in tool shed and galaxy installation process (thanks to `@mvdbeek `__). @@ -316,16 +303,12 @@ Enhancements `Pull Request 4403`_ * Generalize allow_library_path_paste to allow_path_paste. `Pull Request 4404`_ -* Admin grid groups revision - `Pull Request 4405`_ * Small GRT bugfixes (thanks to `@erasche `__). `Pull Request 4408`_ * Update conda channel order to sync with Bioconda (thanks to `@nsoranzo `__). `Pull Request 4409`_ -* replace mako templates for tool lineage and quotas grids - `Pull Request 4411`_ * Fixes and enhancements for the upload API `Pull Request 4417`_ * Avoid adding `(imported from API)` to workflows @@ -365,7 +348,7 @@ Enhancements * A variety of usability improvements to the workflow index page (show tags, allow import by drag-and-drop, and avoid unneeded page refreshs) (thanks to `@mvdbeek `__). - `Pull Request 4476`_ + `Pull Request 4476`_, `Pull Request 4369`_ * Use pysam instead of samtools binary when discovering BAM metadata in one place (samtools is still required by Galaxy) (thanks to `@nsoranzo `__). @@ -434,8 +417,6 @@ Enhancements `Pull Request 4044`_ * Add admin app `Pull Request 4067`_ -* Preparation for grids mako removal - `Pull Request 4101`_ * Merge ShedToolLineage and StockLineage to ToolLineage (thanks to `@mvdbeek `__). `Pull Request 4119`_ @@ -444,8 +425,6 @@ Enhancements `Pull Request 4137`_ * Move galaxy.tools.toolbox.cache to galaxy.tools.cache. `Pull Request 4155`_ -* Removes mako for datasets grid - `Pull Request 4163`_ * Spacing convention, -> util.asbool, atribute -> attribute (thanks to `@bwlang `__). `Pull Request 4250`_ @@ -462,11 +441,6 @@ Enhancements * Some formatting (thanks to `@VJalili `__). `Pull Request 4333`_ -* Replacing Edit Attributes Mako by JavaScript - (thanks to `@bgruening `__). - `Pull Request 4334`_ -* Admin user grid conversion - `Pull Request 4341`_ * Merging configure menu with main workflow view (thanks to `@bgruening `__). `Pull Request 4353`_ @@ -531,9 +505,6 @@ Enhancements `Pull Request 4630`_ * disable MacOS CI on travis `Pull Request 4631`_ -* Custom Builds tests - (thanks to `@anatskiy `__). - `Pull Request 4641`_ Fixes @@ -613,8 +584,6 @@ Fixes * Fix empty tabular output error when using discover_datasets. (thanks to `@pkrog `__). `Pull Request 4240`_ -* Fix shared history grid - `Pull Request 4263`_ * Importing old exported histories failing (thanks to `@cche `__). `Pull Request 4268`_ @@ -675,8 +644,6 @@ Fixes `Pull Request 4445`_ * Fix E201 errors (spaces in parens) in new memepsp datatype `Pull Request 4446`_ -* Fixes for advanced grid search - `Pull Request 4449`_ * Fix quota function name `Pull Request 4469`_ * Fixes for VCF/BCF datatypes @@ -732,29 +699,27 @@ Fixes * Updated function description and fix some typos (thanks to `@VJalili `__). `Pull Request 4629`_ -* Fix data order in Custom Builds +* Fix display of data in "custom builds" page (thanks to `@anatskiy `__). `Pull Request 4634`_ -* do not wrap lines in the upload url fetch +* Do not wrap lines in the upload URL fetch. `Pull Request 4639`_ -* BUG: Explicitly write registry.xml when creating a job for the upload tool +* Explicitly write registry.xml when creating a job for the upload tool (thanks to `@mvdbeek `__). `Pull Request 4644`_ * Fix links on workflow, history items. `Pull Request 4656`_ -* Fix modules resolver +* Fix for modules resolver. `Pull Request 4663`_ -* Remove chatty debug statement +* Remove overly chatty debug statement. `Pull Request 4671`_ -* Client side fixes for GIEs +* Client side fixes for GIEs. `Pull Request 4680`_ -* Update versions of conda and conda-build +* Update target versions of conda and conda-build (thanks to `@nsoranzo `__). `Pull Request 4701`_ * Correct base route for workflows, allowing proxy-prefix to work. `Pull Request 4705`_ -* Append fewer characters to id_secret by default for encrypting csrf tokens. - `Pull Request 4710`_ * Cachebust IE require'd files (jupyter.js, etc). `Pull Request 4714`_ * Add message (error and info) display to workflows display list.