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Added unicode and raw flags to the re.sub string - not tested with unicode name yet..

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Ross Lazarus
2012-08-11 09:42:48 +10:00
parent 5238e15eb7
commit 11349f28b5
1 changed files with 1 additions and 1 deletions
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tools/rgenetics/rgFastQC.py
+1 -1
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@@ -56,7 +56,7 @@ class FastQC():
cl.append('-c %s' % self.opts.contaminants)
# patch suggested by bwlang https://bitbucket.org/galaxy/galaxy-central/pull-request/30
# use a symlink in a temporary directory so that the FastQC report reflects the history input file name
fastqinfilename = re.sub(ru'[^a-zA-Z0-9_\-\.]', '_', os.path.basename(self.opts.inputfilename))
fastqinfilename = re.sub(ur'[^a-zA-Z0-9_\-\.]', '_', os.path.basename(self.opts.inputfilename))
link_name = os.path.join(self.opts.outputdir, fastqinfilename)
os.symlink(self.opts.input, link_name)
cl.append(link_name)