From 11349f28b595d3401a04d3aab61dd9b030971dc9 Mon Sep 17 00:00:00 2001 From: Ross Lazarus Date: Sat, 11 Aug 2012 09:42:48 +1000 Subject: [PATCH] Added unicode and raw flags to the re.sub string - not tested with unicode name yet.. --- tools/rgenetics/rgFastQC.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tools/rgenetics/rgFastQC.py b/tools/rgenetics/rgFastQC.py index 4e5ff575df9..31336ea19d9 100644 --- a/tools/rgenetics/rgFastQC.py +++ b/tools/rgenetics/rgFastQC.py @@ -56,7 +56,7 @@ class FastQC(): cl.append('-c %s' % self.opts.contaminants) # patch suggested by bwlang https://bitbucket.org/galaxy/galaxy-central/pull-request/30 # use a symlink in a temporary directory so that the FastQC report reflects the history input file name - fastqinfilename = re.sub(ru'[^a-zA-Z0-9_\-\.]', '_', os.path.basename(self.opts.inputfilename)) + fastqinfilename = re.sub(ur'[^a-zA-Z0-9_\-\.]', '_', os.path.basename(self.opts.inputfilename)) link_name = os.path.join(self.opts.outputdir, fastqinfilename) os.symlink(self.opts.input, link_name) cl.append(link_name)