Files
galaxy/test/unit/visualizations/plugins/test_VisualizationPlugin.py
T

199 lines
7.4 KiB
Python

"""
Test lib/galaxy/visualization/plugins/plugin.
"""
import os
import imp
import unittest
test_utils = imp.load_source( 'test_utils',
os.path.join( os.path.dirname( __file__), os.pardir, os.pardir, 'unittest_utils', 'utility.py' ) )
import galaxy_mock
from galaxy.visualization.plugins import plugin as vis_plugin
from galaxy.visualization.plugins import resource_parser
from galaxy.visualization.plugins import utils as vis_utils
# -----------------------------------------------------------------------------
class VisualizationsPlugin_TestCase( test_utils.unittest.TestCase ):
plugin_class = vis_plugin.VisualizationPlugin
def test_default_init( self ):
"""
A plugin with no context passed in should have sane defaults.
"""
vis_dir = galaxy_mock.MockDir({
'config' : {
'vis1.xml' : ''
},
'static' : {},
'templates' : {},
})
config = dict()
plugin = self.plugin_class( galaxy_mock.MockApp(), vis_dir.root_path,
'myvis', config )
self.assertEqual( plugin.name, 'myvis' )
self.assertEqual( plugin.path, vis_dir.root_path )
self.assertEqual( plugin.config, {} )
self.assertEqual( plugin.base_url, 'myvis' )
# static
self.assertTrue( plugin.serves_static )
self.assertEqual( plugin.static_path, vis_dir.root_path + '/static' )
self.assertEqual( plugin.static_url, 'myvis/static' )
# template
self.assertTrue( plugin.serves_templates )
self.assertEqual( plugin.template_path, vis_dir.root_path + '/templates' )
self.assertEqual( plugin.template_lookup.__class__.__name__, 'TemplateLookup' )
# resource parser
self.assertIsInstance( plugin.resource_parser, resource_parser.ResourceParser )
def test_init_with_context( self ):
"""
A plugin with context passed in should use those in it's set up.
"""
vis_dir = galaxy_mock.MockDir({
'config' : {
'vis1.xml' : ''
},
'static' : {},
'templates' : {},
})
config = dict()
context = dict(
base_url='u/wot/m8',
template_cache_dir='template_cache',
additional_template_paths=[ 'one' ]
)
plugin = self.plugin_class( galaxy_mock.MockApp(), vis_dir.root_path,
'myvis', config, context=context )
self.assertEqual( plugin.base_url, 'u/wot/m8/myvis' )
# static
self.assertEqual( plugin.static_url, 'u/wot/m8/myvis/static' )
# template
self.assertEqual( plugin.template_lookup.__class__.__name__, 'TemplateLookup' )
def test_init_without_static_or_templates( self ):
"""
A plugin that has neither template or static directory should serve neither.
"""
vis_dir = galaxy_mock.MockDir({
'config' : {
'vis1.xml' : ''
}
})
plugin = self.plugin_class( galaxy_mock.MockApp(), vis_dir.root_path,
'myvis', dict() )
self.assertFalse( plugin.serves_static )
self.assertFalse( plugin.serves_templates )
# not sure what this would do, but...
def test_build_render_vars_default( self ):
"""
Render vars passed to render should default properly.
"""
# well, that's kind of a lot of typing to say nothing new
config = dict(
name='Cat Fancy Magazine\'s Genomic Visualization'
)
plugin = self.plugin_class( galaxy_mock.MockApp(), '', 'myvis', config )
render_vars = plugin._build_render_vars( config )
self.assertEqual( render_vars[ 'visualization_name' ], plugin.name )
self.assertEqual( render_vars[ 'visualization_display_name' ], plugin.config[ 'name' ] )
self.assertEqual( render_vars[ 'title' ], None )
self.assertEqual( render_vars[ 'saved_visualization' ], None )
self.assertEqual( render_vars[ 'visualization_id' ], None )
self.assertEqual( render_vars[ 'query' ], {} )
self.assertIsInstance( render_vars[ 'config' ], vis_utils.OpenObject )
self.assertEqual( render_vars[ 'config' ].__dict__, {} )
def test_build_config( self ):
"""
"""
plugin_config = dict()
plugin = self.plugin_class( galaxy_mock.MockApp(), '', 'myvis', plugin_config )
config = plugin._build_config( {} )
self.assertIsInstance( config, vis_utils.OpenObject )
self.assertEqual( config.__dict__, {} )
# existing should flow through
plugin_config = dict()
plugin = self.plugin_class( galaxy_mock.MockApp(), '', 'myvis', plugin_config )
existing_config = dict( wat=1 )
config = plugin._build_config( existing_config )
self.assertEqual( config.wat, 1 )
# unlisted/non-param kwargs should NOT overwrite existing
plugin_config = dict()
plugin = self.plugin_class( galaxy_mock.MockApp(), '', 'myvis', plugin_config )
existing_config = dict( wat=1 )
config = plugin._build_config( existing_config, wat=2 )
self.assertEqual( config.wat, 1 )
# listed/param kwargs *should* overwrite existing
plugin_config = dict(
params=dict(
wat={
'csv' : False,
'required' : False,
'type' : 'int',
'var_name_in_template': 'wot'
},
)
)
plugin = self.plugin_class( galaxy_mock.MockApp(), '', 'myvis', plugin_config )
existing_config = dict( wat=1 )
# send as string like a query would - should be parsed
config = plugin._build_config( existing_config, wat='2' )
self.assertEqual( config.wat, 2 )
def test_render( self ):
"""
"""
# use the python in a template to test for variables that should be there
# TODO: gotta be a better way
testing_template = test_utils.clean_multiline_string( """\
<%
found_all = True
should_have = [
title, visualization_name, visualization_display_name,
visualization_id, saved_visualization,
query, config,
embedded,
vars
]
for var in should_have:
try:
var = str( var )
except NameError, name_err:
found_all = False
break
%>
${ found_all }
""" )
mock_app_dir = galaxy_mock.MockDir({
'cache' : {},
'template.mako' : testing_template
})
mock_app = galaxy_mock.MockApp( root=mock_app_dir.root_path )
plugin = self.plugin_class( mock_app, '', 'myvis', {
"name" : "Vlad News Bears"
})
# somewhat easier to set this up by hand
plugin.config[ 'entry_point' ] = { 'file' : 'template.mako' }
plugin.template_path = mock_app_dir.root_path
plugin.template_lookup = plugin._build_template_lookup( mock_app_dir.root_path )
response = plugin.render( trans=galaxy_mock.MockTrans( app=mock_app ) )
self.assertIsInstance( response, basestring )
self.assertEqual( response.strip(), "True" )
# -----------------------------------------------------------------------------
# TODO: config parser tests (in separate file)
if __name__ == '__main__':
unittest.main()