John Chilton eddfec36fd Refactor package_tool for better separation of concerns.
The tool should know how to package itself, it shouldn't be the responsiblity of the toolbox. Update the code to reflect this and use more pythonic exception handling.
2016-01-03 13:10:09 +00:00
2015-12-17 09:21:25 +00:00
2016-01-03 13:10:08 +00:00
2015-09-09 19:34:42 +01:00
2015-06-16 22:34:09 -05:00
2015-12-25 18:56:55 +01:00
2016-01-03 13:10:08 +00:00
2015-12-02 12:00:51 -05:00
2015-05-07 13:26:38 -04:00
2015-10-15 01:50:02 -07:00
2015-11-12 09:07:51 -05:00
2015-06-15 14:34:28 -04:00
2015-12-03 17:11:52 -05:00
2015-07-13 00:13:21 +01:00

.. figure:: https://wiki.galaxyproject.org/Images/GalaxyLogo?action=AttachFile&do=get&target=galaxy_project_logo.jpg
   :alt: Galaxy Logo

The latest information about Galaxy is available via `https://galaxyproject.org/ <https://galaxyproject.org/>`__

.. image:: https://img.shields.io/badge/questions-galaxy%20biostar-blue.svg
    :target: https://biostar.usegalaxy.org
    :alt: Ask a question

.. image:: https://img.shields.io/badge/chat-irc.freenode.net%23galaxyproject-blue.svg
    :target: https://webchat.freenode.net/?channels=galaxyproject
    :alt: Chat with us

.. image:: https://img.shields.io/badge/docs-release-green.svg
    :target: https://docs.galaxyproject.org/en/master/
    :alt: Release Documentation

.. image:: https://travis-ci.org/galaxyproject/galaxy.svg?branch=dev
    :target: https://travis-ci.org/galaxyproject/galaxy
    :alt: Inspect the test results

Galaxy Quickstart
=================

Galaxy requires Python 2.6 or 2.7. To check your python version, run:

.. code:: console

    $ python -V
    Python 2.7.3

Start Galaxy:

.. code:: console

    $ sh run.sh

Once Galaxy completes startup, you should be able to view Galaxy in your
browser at:

http://localhost:8080

You may wish to make changes from the default configuration. This can be
done in the ``config/galaxy.ini`` file. Tools can be either installed
from the Tool Shed or added manually. For details please see the Galaxy
wiki:

https://wiki.galaxyproject.org/Admin/Tools/AddToolFromToolShedTutorial

Not all dependencies are included for the tools provided in the sample
``tool_conf.xml``. A full list of external dependencies is available at:

https://wiki.galaxyproject.org/Admin/Tools/ToolDependencies

Issues and Galaxy Development
=============================

Please see `CONTRIBUTING.md <CONTRIBUTING.md>`_ .
Languages
Python 64.2%
TypeScript 14.5%
Vue 12.5%
JavaScript 3.7%
Jupyter Notebook 2.4%
Other 2.5%