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When a peer process runs the populator (shed install reroute in commit 12, ``reset_shed_tools`` in commit 13, ``--watch`` mode), it broadcasts ``reload_tool_source_cache`` which lands in every Galaxy process's ``invalidate_index_cache``. Until now that only re-read the index — the new ids were reachable via ``get_tool`` lookups but didn't appear in ``_tools_by_id`` until the next boot, so ``/api/tools`` under-reported. Two new helpers close the gap: - ``_register_new_index_entries_as_stubs`` walks the freshly-loaded ``_tool_index.entries`` and registers anything not already in ``_tools_by_id``. - ``_register_lazy_entry(entry)`` is the inverse of the existing ``_register_loaded_tool``: builds a ``LazyTool`` stub, populates ``_tools_by_id`` / ``_tool_versions_by_id`` / ``_tools_by_old_id`` / ``_tools_by_uuid``, assigns ``_lineage`` via ``LazyLineageMap.get``, and slots the stub into ``_tool_panel`` under its declared ``panel_section_id`` (creating the ``ToolSection`` if absent). This is the broadcast-side hook that makes peer-process installs visible in this process without waiting for a full toolbox reload. 22/22 unit tests still pass.
.. figure:: https://galaxyproject.org/images/galaxy-logos/galaxy_project_logo.jpg
:alt: Galaxy Logo
The latest information about Galaxy can be found on the `Galaxy Community Hub <https://galaxyproject.org/>`__.
Community support is available at `Galaxy Help <https://help.galaxyproject.org/>`__.
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:alt: Chat on gitter
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:alt: Chat on irc
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:alt: Release Documentation
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:target: https://travis-ci.org/galaxyproject/galaxy
:alt: Inspect the test results
Galaxy Quickstart
=================
Galaxy requires Python 3.10 or higher. To check your Python version, run:
.. code:: console
$ python -V
Python 3.10.12
Start Galaxy:
.. code:: console
$ sh run.sh
Once Galaxy completes startup, you should be able to view Galaxy in your
browser at: http://localhost:8080
For more installation details please see: https://getgalaxy.org/
Documentation is available at: https://docs.galaxyproject.org/
Tutorials on how to use Galaxy, perform scientific analyses with it, develop Galaxy and its tools, and admin a Galaxy server are at: https://training.galaxyproject.org/
Tools
=====
Tools can be either installed from the Tool Shed or added manually.
For details please see the `tutorial <https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/>`__.
Note that not all dependencies for the tools provided in the
``tool_conf.xml.sample`` are included. To install them please visit
"Manage dependencies" in the admin interface.
Issues and Galaxy Development
=============================
Please see `CONTRIBUTING.md <CONTRIBUTING.md>`_ .