mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-10-24 02:04:04 +08:00
John Chilton
ec34287afd
- Update mulled container resolution to use a version 2 (v2) hashing function. https://github.com/galaxyproject/galaxy-lib/pull/63 - When building images with mulled, always cleanup build directory. https://github.com/galaxyproject/galaxy-lib/pull/55/files and https://github.com/galaxyproject/galaxy-lib/pull/61 - Expose an offline search option in library Conda search utility. https://github.com/galaxyproject/galaxy-lib/pull/60 - Fix first use of mulled-build-* for auto-install of Involucro. https://github.com/galaxyproject/galaxy-lib/pull/59/commits/c5e7778f51d735a8bb6a4a955a0768e65bfb0548 - Fix up and improve logic related to rebuilding mulled containers. https://github.com/galaxyproject/galaxy-lib/pull/59/commits/faf528997c36f8a9a00566549ab2bcb07e93a9d7 - Fix mulled-build-files to properly handle tab separated files. https://github.com/galaxyproject/galaxy-lib/pull/59/commits/10b1cf3addf03e1e442c2d1617c7468de67b2cac - Various other mulled-build-file enhancements. https://github.com/galaxyproject/galaxy-lib/pull/59/commits/70314e3e65921a544f2188eb2a16f8e7394ff1b7 https://github.com/galaxyproject/galaxy-lib/pull/59/commits/21b4bc58013dc53509f02d027afa73396a15aabd https://github.com/galaxyproject/galaxy-lib/pull/59/commits/74abe8a107044e106e14c244d03b030e0ed5d43d https://github.com/galaxyproject/galaxy-lib/pull/58 - Correct mulled-search default namespace from mulled to biocontainers. https://github.com/galaxyproject/galaxy-lib/pull/57 - Add ability to specify a new base image when building mulled images. https://github.com/galaxyproject/galaxy-lib/pull/56 - Update the default mulled target namespace from the older mulled to the new biocontainers.
.. figure:: https://galaxyproject.org/images/galaxy-logos/galaxy_project_logo.jpg
:alt: Galaxy Logo
The latest information about Galaxy is available via `https://galaxyproject.org/ <https://galaxyproject.org/>`__
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:target: https://biostar.usegalaxy.org
:alt: Ask a question
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:target: https://webchat.freenode.net/?channels=galaxyproject
:alt: Chat on irc
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:target: https://gitter.im/galaxyproject/Lobby
:alt: Chat on gitter
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:target: https://docs.galaxyproject.org/en/master/
:alt: Release Documentation
.. image:: https://travis-ci.org/galaxyproject/galaxy.svg?branch=dev
:target: https://travis-ci.org/galaxyproject/galaxy
:alt: Inspect the test results
Galaxy Quickstart
=================
Galaxy requires Python 2.7 To check your python version, run:
.. code:: console
$ python -V
Python 2.7.3
Start Galaxy:
.. code:: console
$ sh run.sh
Once Galaxy completes startup, you should be able to view Galaxy in your
browser at:
http://localhost:8080
You may wish to make changes from the default configuration. This can be
done in the ``config/galaxy.ini`` file. Tools can be either installed
from the Tool Shed or added manually. For details please see the Galaxy
wiki:
https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/
Not all dependencies are included for the tools provided in the sample
``tool_conf.xml``. A full list of external dependencies is available at:
https://wiki.galaxyproject.org/Admin/Tools/ToolDependencies
Issues and Galaxy Development
=============================
Please see `CONTRIBUTING.md <CONTRIBUTING.md>`_ .
Roadmap
=============================
Interested in the next steps for Galaxy? Take a look here: https://github.com/galaxyproject/galaxy/issues/1928