Nate Coraor 8d96c8d979 imported patch alchemy05_fixes_02

2009-11-03 12:52:01 -05:00

..

annotation_profiler

typo fixes for tools in folders A-M

2009-09-27 23:11:43 -04:00

data_destination

merging from central

2008-10-28 11:28:15 -04:00

data_source

imported patch alchemy05_fixes_02

2009-11-03 12:52:01 -05:00

emboss_5

Forgot to eliminate the emboss path...

2008-04-25 19:07:26 +00:00

encode

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

evolution

Changing an 'and' to 'or' in SNP mutate codon tool error checking.

2009-09-22 11:40:41 -04:00

extract

typo fixes for tools in folders A-M

2009-09-27 23:11:43 -04:00

fasta_tools

Fixed for functional tests for new version of fasta_filter_by_length tool contributed by James Casbon.

2009-07-23 14:31:11 -04:00

fastx_toolkit

Modified test data and tool conf for fastq stats

2009-10-08 14:50:28 -04:00

filters

imported patch alchemy05_fixes_02

2009-11-03 12:52:01 -05:00

hyphy

typo fixes for tools in folders A-M

2009-09-27 23:11:43 -04:00

maf

imported patch alchemy05_fixes_02

2009-11-03 12:52:01 -05:00

metag_tools

Modified test data and tool conf for fastq stats

2009-10-08 14:50:28 -04:00

new_operations

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

next_gen_conversion

Updated solid_to_fastq so that -1 qualities are converted to 1 before conversion to FASTQ.

2009-10-21 16:04:24 -04:00

plotting

Fix bar chart output format.

2009-08-03 16:38:27 -04:00

regVariation

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

samtools

bug fix for pilup_parser reported by user

2009-10-06 09:44:34 -04:00

solid_tools

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

sr_mapping

Changed the number of threads from 8 to 4 for BWA wrapper and Bowtie wrapper

2009-10-27 14:31:59 -04:00

stats

Added 'Median' operation to grouping tool

2009-10-08 10:37:26 -04:00

taxonomy

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

validation

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

visualization

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00