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https://github.com/galaxyproject/galaxy.git
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mvdbeek
e18dfb9b70
Fixes
```
Traceback (most recent call last):
File "/Users/mvandenb/src/galaxy/lib/galaxy/web/framework/decorators.py", line 157, in decorator
rval = func(self, trans, *args, **kwargs)
File "/Users/mvandenb/src/galaxy/lib/galaxy/webapps/galaxy/api/datasets.py", line 137, in show
is_true(kwd.get('retry', False)))
File "/Users/mvandenb/src/galaxy/lib/galaxy/webapps/galaxy/api/datasets.py", line 212, in _converted_datasets_state
if not data_provider.has_data(chrom):
File "/Users/mvandenb/src/galaxy/lib/galaxy/visualization/data_providers/genome.py", line 1125, in has_data
f, bbi = self._get_dataset()
File "/Users/mvandenb/src/galaxy/lib/galaxy/visualization/data_providers/genome.py", line 1261, in _get_dataset
return f, BigWigFile(file=f)
File "lib/bx/bbi/bigwig_file.pyx", line 161, in bx.bbi.bigwig_file.BigWigFile.__init__
File "lib/bx/bbi/bbi_file.pyx", line 125, in bx.bbi.bbi_file.BBIFile.__init__
File "lib/bx/bbi/bbi_file.pyx", line 135, in bx.bbi.bbi_file.BBIFile.open
File "/Users/mvandenb/src/galaxy/.venv/lib/python3.6/site-packages/bx/misc/binary_file.py", line 40, in __init__
bytes = file.read(4)
File "/Users/mvandenb/src/galaxy/.venv/lib/python3.6/codecs.py", line 321, in decode
(result, consumed) = self._buffer_decode(data, self.errors, final)
```
.. figure:: https://galaxyproject.org/images/galaxy-logos/galaxy_project_logo.jpg
:alt: Galaxy Logo
The latest information about Galaxy can be found on the `Galaxy Community Hub <https://galaxyproject.org/>`__.
Community support is available at `Galaxy Help <https://help.galaxyproject.org/>`__.
.. image:: https://img.shields.io/badge/chat-irc.freenode.net%23galaxyproject-blue.svg
:target: https://webchat.freenode.net/?channels=galaxyproject
:alt: Chat on irc
.. image:: https://img.shields.io/badge/chat-gitter-blue.svg
:target: https://gitter.im/galaxyproject/Lobby
:alt: Chat on gitter
.. image:: https://img.shields.io/badge/release-documentation-blue.svg
:target: https://docs.galaxyproject.org/en/master/
:alt: Release Documentation
.. image:: https://travis-ci.org/galaxyproject/galaxy.svg?branch=dev
:target: https://travis-ci.org/galaxyproject/galaxy
:alt: Inspect the test results
Galaxy Quickstart
=================
Galaxy requires Python 2.7 To check your python version, run:
.. code:: console
$ python -V
Python 2.7.3
Start Galaxy:
.. code:: console
$ sh run.sh
Once Galaxy completes startup, you should be able to view Galaxy in your
browser at:
http://localhost:8080
Configuration & Tools
=====================
You may wish to make changes from the default configuration. This can be
done in the ``config/galaxy.ini`` file.
Tools can be either installed from the Tool Shed or added manually.
For details please see the `tutorial <https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/>`__.
Note that not all dependencies for the tools provided in the
``tool_conf.xml.sample`` are included. To install them please visit
"Manage dependencies" in the admin interface.
Issues and Galaxy Development
=============================
Please see `CONTRIBUTING.md <CONTRIBUTING.md>`_ .
Roadmap
=============================
Interested in the next steps for Galaxy? Take a look at the `roadmap <https://github.com/galaxyproject/galaxy/projects/8>`__.