galaxy

__init__.py

Move ~/lib/galaxy/tool_shed to ~/lib/tool_shed, and move the ~/lib/galaxy/util/shed_util componets to ~/lib/tool_shed/util.

2013-02-26 15:52:51 -05:00

commit_util.py

Add a new tool shed mercurial utility module named hg_util.py and begin to extract hg related utility functions out of the shed_util_common.py module. Enhance the functions that display the mercurial changeset rev and hash string to display one or the other or both. Display only the rev and not the hash string on the prominent grids in the tool shed, but continue to display the hash string on admin grids.

2014-04-10 17:11:01 -04:00

common_install_util.py

Correct usage of "it's" versus "its".

2014-04-17 15:49:32 -04:00

common_util.py

More quickly stop the process of checking for migrated tools when starting Galaxy if there is no internet connection to the tool shed.

2014-04-22 11:45:10 -04:00

container_util.py

Correct usage of "it's" versus "its".

2014-04-17 15:49:32 -04:00

data_manager_util.py

Strip trailing whitespace (and windows line endings) from all python files in lib

2013-08-29 23:39:52 -04:00

datatype_util.py

Strip trailing whitespace (and windows line endings) from all python files in lib

2013-08-29 23:39:52 -04:00

encoding_util.py

Handle combinations of newly defined tool dependencies and repository dependencies that are included in updates being pulled to tool shed repositories installed into Galaxy.

2014-03-26 14:58:08 -04:00

export_util.py

Correct usage of "it's" versus "its".

2014-04-17 15:49:32 -04:00

hg_util.py

Add a new tool shed mercurial utility module named hg_util.py and begin to extract hg related utility functions out of the shed_util_common.py module. Enhance the functions that display the mercurial changeset rev and hash string to display one or the other or both. Display only the rev and not the hash string on the prominent grids in the tool shed, but continue to display the hash string on admin grids.

2014-04-10 17:11:01 -04:00

import_util.py

Correct usage of "it's" versus "its".

2014-04-17 15:49:32 -04:00

metadata_util.py

Correct usage of "it's" versus "its".

2014-04-17 15:49:32 -04:00

readme_util.py

Add a new tool shed mercurial utility module named hg_util.py and begin to extract hg related utility functions out of the shed_util_common.py module. Enhance the functions that display the mercurial changeset rev and hash string to display one or the other or both. Display only the rev and not the hash string on the prominent grids in the tool shed, but continue to display the hash string on admin grids.

2014-04-10 17:11:01 -04:00

repository_dependency_util.py

Handle case where no network is available when attempting to determine repository dependencies for an installed repository.

2014-04-22 10:33:42 -04:00

repository_maintenance_util.py

Add a new tool shed mercurial utility module named hg_util.py and begin to extract hg related utility functions out of the shed_util_common.py module. Enhance the functions that display the mercurial changeset rev and hash string to display one or the other or both. Display only the rev and not the hash string on the prominent grids in the tool shed, but continue to display the hash string on admin grids.

2014-04-10 17:11:01 -04:00

review_util.py

Add a new tool shed mercurial utility module named hg_util.py and begin to extract hg related utility functions out of the shed_util_common.py module. Enhance the functions that display the mercurial changeset rev and hash string to display one or the other or both. Display only the rev and not the hash string on the prominent grids in the tool shed, but continue to display the hash string on admin grids.

2014-04-10 17:11:01 -04:00

search_util.py

A bit of refactoring of the tool shed's repository controller.

2013-07-25 11:01:18 -04:00

shed_util_common.py

Correct usage of "it's" versus "its".

2014-04-17 15:49:32 -04:00

tool_dependency_util.py

Correct usage of "it's" versus "its".

2014-04-17 15:49:32 -04:00

tool_util.py

Add a new tool shed mercurial utility module named hg_util.py and begin to extract hg related utility functions out of the shed_util_common.py module. Enhance the functions that display the mercurial changeset rev and hash string to display one or the other or both. Display only the rev and not the hash string on the prominent grids in the tool shed, but continue to display the hash string on admin grids.

2014-04-10 17:11:01 -04:00

workflow_util.py

The tool shed does not have HDAs, so step annotations cannot be displayed in a workflow in the tool shed.

2013-09-27 16:46:54 -04:00

xml_util.py

Fixes for handling complex repository dependency definitions in tool dependency recipes.

2014-02-26 15:09:43 -05:00