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The tool shed does not have HDAs, so step annotations cannot be displayed in a workflow in the tool shed.

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This commit is contained in:
Greg Von Kuster
2013-09-27 16:46:54 -04:00
parent f79083f9a0
commit e0cb8c61ec
1 changed files with 8 additions and 7 deletions
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lib/tool_shed/util/workflow_util.py
+8 -7
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@@ -389,13 +389,14 @@ def get_workflow_from_dict( trans, workflow_dict, tools_metadata, repository_id,
workflow.has_errors = True
# Stick this in the step temporarily.
step.temp_input_connections = step_dict[ 'input_connections' ]
annotation = step_dict.get( 'annotation', '')
if annotation:
annotation = sanitize_html( annotation, 'utf-8', 'text/html' )
new_step_annotation = trans.model.WorkflowStepAnnotationAssociation()
new_step_annotation.annotation = annotation
new_step_annotation.user = trans.user
step.annotations.append( new_step_annotation )
if trans.webapp.name == 'galaxy':
annotation = step_dict.get( 'annotation', '')
if annotation:
annotation = sanitize_html( annotation, 'utf-8', 'text/html' )
new_step_annotation = trans.model.WorkflowStepAnnotationAssociation()
new_step_annotation.annotation = annotation
new_step_annotation.user = trans.user
step.annotations.append( new_step_annotation )
# Unpack and add post-job actions.
post_job_actions = step_dict.get( 'post_job_actions', {} )
for name, pja_dict in post_job_actions.items():