galaxy

aggregate_binned_scores_in_intervals.xml

2010-02-25 12:27:07 -05:00

Revert 2715.

2008-06-04 13:02:15 +00:00

column_maker.py

Fix the column_maker tool so that if round is set to 'yes', the computed result is actually rounded. Added 2 new functional test to cover behavior.

2010-03-29 14:33:23 -04:00

column_maker.xml

Fix the column_maker tool so that if round is set to 'yes', the computed result is actually rounded. Added 2 new functional test to cover behavior.

2010-03-29 14:33:23 -04:00

cor.py

Removed the remainder of the tool version subdirectories.

2008-03-03 18:38:57 +00:00

cor.xml

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

correlation.pl

Removed the remainder of the tool version subdirectories.

2008-03-03 18:38:57 +00:00

correlation.xml

Removed the remainder of the tool version subdirectories.

2008-03-03 18:38:57 +00:00

dna_filtering.py

Changed some of the filtering logic for DNA code filter tool, and got tests working

2010-02-10 13:18:45 -05:00

dna_filtering.xml

Corrected some typos in DNA filtering tool

2010-02-10 14:59:46 -05:00

filtering.py

Enable filter tool to operate correctly on files with a variable number of columns (such as SAM files). Tool prepares and processes only columns up to and including the right-most column (i.e. column with the largest index) in the filtering condition, and subsequent columns are ignored. New functional test added for this functionality as well.

2010-11-04 16:30:34 -04:00

filtering.xml

Enable filter tool to operate correctly on files with a variable number of columns (such as SAM files). Tool prepares and processes only columns up to and including the right-most column (i.e. column with the largest index) in the filtering condition, and subsequent columns are ignored. New functional test added for this functionality as well.

2010-11-04 16:30:34 -04:00

generate_matrix_for_pca_lda.pl

Modify tools contributed by Chungoo Park (cxp440@psu.edu) for Linear Discriminant Analysis, and drawing Receiver Operating Characteristic plots; add a new tool to 'Generate A Matrix for using PC and LDA'; remove redundant 'Principal Component Analysis' tool.

2010-07-16 14:52:52 -04:00

generate_matrix_for_pca_lda.xml

Modify tools contributed by Chungoo Park (cxp440@psu.edu) for Linear Discriminant Analysis, and drawing Receiver Operating Characteristic plots; add a new tool to 'Generate A Matrix for using PC and LDA'; remove redundant 'Principal Component Analysis' tool.

2010-07-16 14:52:52 -04:00

grouping.py

Use a literal tab character instead of the bash $'\t' syntax in the grouping tool. This makes it compatible with bourne sh and dash.

2010-09-27 21:02:37 -04:00

grouping.xml

Modified Group tool by adding Mode function to the list of aggregate operations.

2010-07-29 12:21:09 -04:00

gsummary.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

gsummary.xml

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

gsummary.xml.groups

Corrected old directions on several tools.

2008-03-13 20:46:43 +00:00

lda_analy.xml

Modify tools contributed by Chungoo Park (cxp440@psu.edu) for Linear Discriminant Analysis, and drawing Receiver Operating Characteristic plots; add a new tool to 'Generate A Matrix for using PC and LDA'; remove redundant 'Principal Component Analysis' tool.

2010-07-16 14:52:52 -04:00

plot_from_lda.xml

Modify tools contributed by Chungoo Park (cxp440@psu.edu) for Linear Discriminant Analysis, and drawing Receiver Operating Characteristic plots; add a new tool to 'Generate A Matrix for using PC and LDA'; remove redundant 'Principal Component Analysis' tool.

2010-07-16 14:52:52 -04:00

r_wrapper.sh

Make r_wrapper.sh bourne/dash compatible.

2010-09-27 21:53:25 -04:00

wiggle_to_simple.py

Better exception handling in wiggle_to_simple converter.

2008-04-16 14:08:53 +00:00

wiggle_to_simple.xml

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00