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40 lines
1.4 KiB
XML
40 lines
1.4 KiB
XML
<tool id="interactive_tool_higlass" tool_type="interactive" name="HiGlass" version="1.8.0">
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<description>an interactive Hi-C data visualizer</description>
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<requirements>
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<container type="docker">quay.io/bgruening/galaxy-higlass</container>
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</requirements>
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<entry_points>
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<entry_point name="HiGlass Visualisation on $matrix.display_name" requires_domain="True">
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<port>80</port>
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</entry_point>
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</entry_points>
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<command><![CDATA[
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cp '$matrix' /tmp/matrix.cool &&
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cd /home/higlass/projects &&
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mkdir -p data/log/ &&
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supervisord &&
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sleep 5 &&
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python higlass-server/manage.py ingest_tileset --filename /tmp/matrix.cool --filetype cooler --datatype matrix &&
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tail -f /var/log/supervisor/*
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]]>
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</command>
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<inputs>
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<param name="matrix" type="data" format="mcool" label="Cool file with multiple resolutions"/>
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</inputs>
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<outputs>
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<data name="outfile" format="txt" />
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</outputs>
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<tests>
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</tests>
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<help>
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Interactive tool for visualising Hi-C data, works only for multi-cooler files which store multiple resolutions.
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For a detailed documentaition please visit https://docs.higlass.io/.
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</help>
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<xml name="citations">
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<citations>
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<citation type="doi">10.1186/s13059-018-1486-1</citation>
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</citations>
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</xml>
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</tool>
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