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adding higlass IT from eu

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Alexander OSTROVSKY
2020-03-24 09:38:09 -07:00
parent b65a9b0e72
commit 05202d52f7
1 changed files with 39 additions and 0 deletions
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tools/interactive/interactivetool_higlass.xml
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<tool id="interactive_tool_higlass" tool_type="interactive" name="HiGlass" version="1.8.0">
<description>an interactive Hi-C data visualizer</description>
<requirements>
<container type="docker">quay.io/bgruening/galaxy-higlass</container>
</requirements>
<entry_points>
<entry_point name="HiGlass Visualisation on $matrix.display_name" requires_domain="True">
<port>80</port>
</entry_point>
</entry_points>
<command><![CDATA[
cp '$matrix' /tmp/matrix.cool &&
cd /home/higlass/projects &&
mkdir -p data/log/ &&
supervisord &&
sleep 5 &&
python higlass-server/manage.py ingest_tileset --filename /tmp/matrix.cool --filetype cooler --datatype matrix &&
tail -f /var/log/supervisor/*
]]>
</command>
<inputs>
<param name="matrix" type="data" format="mcool" label="Cool file with multiple resolutions"/>
</inputs>
<outputs>
<data name="outfile" format="txt" />
</outputs>
<tests>
</tests>
<help>
Interactive tool for visualising Hi-C data, works only for multi-cooler files which store multiple resolutions.
For a detailed documentaition please visit https://docs.higlass.io/.
</help>
<xml name="citations">
<citations>
<citation type="doi">10.1186/s13059-018-1486-1</citation>
</citations>
</xml>
</tool>