John Chilton 4ddab82e9e Add annotated citations for MAF tools. ...

Add macro file to centralize this and in help citation description as well.

2014-08-06 09:41:38 -04:00

..

genebed_maf_to_fasta.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00

interval2maf_pairwise.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00

interval2maf.py

Fix limiting species in interval2maf tool.

2009-09-29 21:47:59 -04:00

interval2maf.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00

interval_maf_to_merged_fasta.py

First pass at allowing MAF tools to deal with multiple occurrences of a species within a block. Tool versions have been incremented as necessary.

2009-09-04 10:40:16 -04:00

interval_maf_to_merged_fasta.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00

macros.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00

maf_by_block_number.py

Allow workflows that contain tools that had parameters added to them after the workflow was created to be edited. Workflows containing tools with added parameters can still not be run until after they are edited and saved. Default values are provided in the workflow building mode.

2009-02-04 14:55:45 -05:00

maf_by_block_number.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00

maf_filter.py

First pass at allowing MAF tools to deal with multiple occurrences of a species within a block. Tool versions have been incremented as necessary.

2009-09-04 10:40:16 -04:00

maf_filter.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00

maf_limit_size.py

First pass at allowing MAF tools to deal with multiple occurrences of a species within a block. Tool versions have been incremented as necessary.

2009-09-04 10:40:16 -04:00

maf_limit_size.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00

maf_limit_to_species.py

First pass at allowing MAF tools to deal with multiple occurrences of a species within a block. Tool versions have been incremented as necessary.

2009-09-04 10:40:16 -04:00

maf_limit_to_species.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00

maf_reverse_complement.py

Allow workflows that contain tools that had parameters added to them after the workflow was created to be edited. Workflows containing tools with added parameters can still not be run until after they are edited and saved. Default values are provided in the workflow building mode.

2009-02-04 14:55:45 -05:00

maf_reverse_complement.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00

maf_split_by_species.py

First pass at allowing MAF tools to deal with multiple occurrences of a species within a block. Tool versions have been incremented as necessary.

2009-09-04 10:40:16 -04:00

maf_split_by_species.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00

maf_stats.py

MAF stats tool will now skip intervals with length less 1.

2011-09-23 09:36:57 -04:00

maf_stats.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00

maf_thread_for_species.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

maf_thread_for_species.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00

maf_to_bed_code.py

Update MAF to BED to use job working directory and built-in primary dataset collection.

2014-04-18 13:23:38 -04:00

maf_to_bed.py

Update MAF to BED to use job working directory and built-in primary dataset collection.

2014-04-18 13:23:38 -04:00

maf_to_bed.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00

maf_to_fasta_concat.py

First pass at allowing MAF tools to deal with multiple occurrences of a species within a block. Tool versions have been incremented as necessary.

2009-09-04 10:40:16 -04:00

maf_to_fasta_multiple_sets.py

First pass at allowing MAF tools to deal with multiple occurrences of a species within a block. Tool versions have been incremented as necessary.

2009-09-04 10:40:16 -04:00

maf_to_fasta.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00

maf_to_interval.py

Add a MAF to Interval converter that produces a set of intervals with sequence data.

2009-09-17 11:47:37 -04:00

maf_to_interval.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00

vcf_to_maf_customtrack.py

Support for VCFv4.0 and misc VCF fixes [Brad Chapman]

2010-08-03 10:43:32 -04:00

vcf_to_maf_customtrack.xml

Add annotated citations for MAF tools.

2014-08-06 09:41:38 -04:00