James Taylor cff01df993 Accidently commited a testing change, removed

2009-04-29 14:47:18 -04:00

..

annotation_profiler

Fix annotation profiler interpreter to be python, not python2.4

2009-01-30 11:37:51 -05:00

data_destination

merging from central

2008-10-28 11:28:15 -04:00

data_source

merging heads

2009-03-26 11:13:13 -04:00

emboss_5

Forgot to eliminate the emboss path...

2008-04-25 19:07:26 +00:00

encode

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

extract

Added a new option to specify minimum match value in the liftOver tool.

2009-04-03 13:25:01 -04:00

fasta_tools

remove the usage of hast tables in the fasta-tools

2009-01-19 15:47:02 -05:00

fastx_toolkit

Integration of Assaf Gordon's Solexa toolkit into Galaxy - (all tools except 3 are working fine).

2009-02-20 14:17:46 -05:00

filters

Collapsed changeset: Trackster plugged into galaxy with behind-the-scenes indexing of Wiggle, coverage and interval datasets.

2009-03-11 00:29:01 +00:00

hyphy

Fixes to get functional tests working.

2009-02-03 18:34:27 -05:00

maf

Accidently commited a testing change, removed

2009-04-29 14:47:18 -04:00

metag_tools

Replacing \"qual\" datatype with 3 new datatypes: qualsolid, qual454 and qualsolexa.

2009-04-29 11:53:22 -04:00

new_operations

Added more test-cases to GOPS JOIN to include cases with different cut-offs for overlap.

2008-12-12 12:12:59 -05:00

plotting

push changesets to security from central

2009-03-05 13:09:02 -05:00

regVariation

Added an option to mask non-CpG sites to the \"Mask CpG sites\" tool.

2009-04-27 11:59:42 -04:00

sr_mapping

A simple tool for merging columns. Surprisingly useful for some analyses and also requested by a user lest Friday

2009-02-09 23:57:41 -05:00

stats

Display only the number of associations on the main users, groups, roles pages rather than the associated objects - much faster display times. Also a tweek to my last fix for the column_maker tool.

2009-04-27 16:03:44 -04:00

taxonomy

Fixed finf_diag_hits plus a ttypo correction

2009-04-21 09:36:42 -04:00

validation

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

visualization

Using deprecated sha module in place of hashlib to keep compatibility with python2.4

2009-02-05 15:34:31 -05:00