galaxy

best_regression_subsets.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

best_regression_subsets.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

compute_q_values.pl

Fixed functional test for 'compute q values' tool - q-value is rounded to 6 significant digits, which shouldn't differ between different runs of the tool.

2011-02-28 14:04:53 -05:00

compute_q_values.xml

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

featureCounter.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

featureCounter.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

getIndelRates_3way.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

getIndelRates_3way.xml

Modified help message for indel rate tool.

2008-10-06 09:33:52 -04:00

getIndels_2way.xml

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

getIndels.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

linear_regression.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

linear_regression.xml

An uninitialized value in R's PDF driver was causing it to sometimes randomly add a few elements to PDF outputs. The bug has been fixed in the buildbot environment and these changes account for that fix.

2011-03-08 11:17:57 -05:00

logistic_regression_vif.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

logistic_regression_vif.xml

Added 3 tools: 1) to compute weighted average values based on interval intersections (under Regional variation), 2) to perform logistic regression (under Multiple regression), 3) to compute partial R-squared (under Multiple regression).

2011-11-03 10:49:45 -04:00

maf_cpg_filter.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

maf_cpg_filter.xml

Better determination in tests if a provided input is a DataToolParameter to better handle .gz and .zip uploads and allowing uploads from a sub-directory of test-data/.

2011-02-28 12:16:28 -05:00

microsats_alignment_level.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

microsats_alignment_level.xml

Convert a bunch of binary requirement tags to package requirements, and change the sputnik tool to call 'sputnik' instead of 'bx-sputnik'.

2010-10-07 16:23:57 -04:00

microsats_mutability.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

microsats_mutability.xml

Adding modified hyphy functional test output files, which have changed as the new version of HYPHY is installed on Galaxy. Also changing version numbers for all the affected tools.

2009-01-27 16:17:22 -05:00

partialR_square.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

partialR_square.xml

Added 3 tools: 1) to compute weighted average values based on interval intersections (under Regional variation), 2) to perform logistic regression (under Multiple regression), 3) to compute partial R-squared (under Multiple regression).

2011-11-03 10:49:45 -04:00

quality_filter.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

quality_filter.xml

Better determination in tests if a provided input is a DataToolParameter to better handle .gz and .zip uploads and allowing uploads from a sub-directory of test-data/.

2011-02-28 12:16:28 -05:00

qv_to_bqv.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

qv_to_bqv.xml

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

rcve.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

rcve.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

substitution_rates.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

substitution_rates.xml

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

substitutions.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

substitutions.xml

Adding tools to compute Substitution rates.

2008-09-21 17:36:28 -04:00

WeightedAverage.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

WeightedAverage.xml

Added 3 tools: 1) to compute weighted average values based on interval intersections (under Regional variation), 2) to perform logistic regression (under Multiple regression), 3) to compute partial R-squared (under Multiple regression).

2011-11-03 10:49:45 -04:00

windowSplitter.py

Remove unused imports and unused variables. Fix spacing.

2014-01-27 19:51:46 +01:00

windowSplitter.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00