mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
82 lines
3.2 KiB
Python
82 lines
3.2 KiB
Python
# Test tools API.
|
|
from itertools import chain
|
|
|
|
from base import api
|
|
from operator import itemgetter
|
|
from .helpers import TestsDatasets
|
|
|
|
|
|
class ToolsTestCase( api.ApiTestCase, TestsDatasets ):
|
|
|
|
def test_index( self ):
|
|
index = self._get( "tools" )
|
|
tools_index = index.json()
|
|
# In panels by default, so flatten out sections...
|
|
tools = list( chain( *map( itemgetter( "elems" ), tools_index ) ) )
|
|
tool_ids = map( itemgetter( "id" ), tools )
|
|
assert "upload1" in tool_ids
|
|
assert "cat1" in tool_ids
|
|
|
|
def test_no_panel_index( self ):
|
|
index = self._get( "tools", data=dict(in_panel="false") )
|
|
tools_index = index.json()
|
|
# No need to flatten out sections, with in_panel=False, only tools are
|
|
# returned.
|
|
tool_ids = map( itemgetter( "id" ), tools_index )
|
|
assert "upload1" in tool_ids
|
|
assert "cat1" in tool_ids
|
|
|
|
def test_upload1_paste( self ):
|
|
history_id = self._new_history()
|
|
payload = self._upload_payload( history_id, 'Hello World' )
|
|
create_response = self._post( "tools", data=payload )
|
|
self._assert_has_keys( create_response.json(), 'outputs' )
|
|
|
|
def test_upload_posix_newline_fixes( self ):
|
|
windows_content = "1\t2\t3\r4\t5\t6\r"
|
|
posix_content = windows_content.replace("\r", "\n")
|
|
result_content = self._upload_and_get_content( windows_content )
|
|
self.assertEquals( result_content, posix_content )
|
|
|
|
def test_upload_disable_posix_fix( self ):
|
|
windows_content = "1\t2\t3\r4\t5\t6\r"
|
|
result_content = self._upload_and_get_content( windows_content, to_posix_lines=None )
|
|
self.assertEquals( result_content, windows_content )
|
|
|
|
def test_upload_tab_to_space( self ):
|
|
table = "1 2 3\n4 5 6\n"
|
|
result_content = self._upload_and_get_content( table, space_to_tab="Yes" )
|
|
self.assertEquals( result_content, "1\t2\t3\n4\t5\t6\n" )
|
|
|
|
def test_upload_tab_to_space_off_by_default( self ):
|
|
table = "1 2 3\n4 5 6\n"
|
|
result_content = self._upload_and_get_content( table )
|
|
self.assertEquals( result_content, table )
|
|
|
|
def test_run_cat1( self ):
|
|
history_id = self._new_history()
|
|
new_dataset = self._new_dataset( history_id )
|
|
dataset_id = new_dataset[ 'id' ]
|
|
payload = self._run_tool_payload(
|
|
tool_id='cat1',
|
|
inputs=dict(
|
|
input1=dict(
|
|
src='hda',
|
|
id=dataset_id
|
|
),
|
|
),
|
|
history_id=history_id,
|
|
)
|
|
create_response = self._post( "tools", data=payload )
|
|
self._assert_status_code_is( create_response, 200 )
|
|
self._assert_has_keys( create_response.json(), 'outputs' )
|
|
self._wait_for_history( history_id, assert_ok=True )
|
|
|
|
def _upload_and_get_content( self, content, **upload_kwds ):
|
|
history_id = self._new_history()
|
|
new_dataset = self._new_dataset( history_id, content=content, **upload_kwds )
|
|
self._wait_for_history( history_id, assert_ok=True )
|
|
display_response = self._get( "histories/%s/contents/%s/display" % ( history_id, new_dataset[ "id" ] ) )
|
|
self._assert_status_code_is( display_response, 200 )
|
|
return display_response.content
|