John Chilton d0ca02415f Allow tool outputs to configure runtime dataset discovery. ...

Output tags on tool XML datasets may contain any number of child "discover_datasets" elements describing how Galaxy should discover datasests. This new method only works for job_working_directory collection - new_file_path based discovery should be considered deprecated.

Example unit and functional tests describe this new configurability in detail.

2014-03-29 17:11:17 -05:00

..

api

Merged in jmchilton/galaxy-central-fork-1 (pull request #348)

2014-03-26 16:21:15 -05:00

tools

Allow tool outputs to configure runtime dataset discovery.

2014-03-29 17:11:17 -05:00

__init__.py

New functional test harness. Update to recent nose. No longer rely on nose to manage the embedded web server (this is not done in functional_tests.py). Log page contents to a temporary file on check_page_for_string error.

2009-10-20 13:08:29 -04:00

database_contexts.py

Models: Introduce app.install_model.

2013-12-05 00:20:54 -06:00

test_admin_features.py

More work on eliminating references to test_db_util.sa_session.

2014-01-11 22:40:18 -06:00

test_data_managers.py

Rename functions to prevent encapsulation / name mangling in test_toolbox.py and test_data_managers.py

2013-12-11 09:00:01 -05:00

test_data_security.py

More work on eliminating references to test_db_util.sa_session.

2014-01-11 22:40:18 -06:00

test_dataset_features.py

More work on eliminating references to test_db_util.sa_session.

2014-01-11 22:40:18 -06:00

test_DNAse_flanked_genes.py

More work on eliminating references to test_db_util.sa_session.

2014-01-11 22:40:18 -06:00

test_get_data.py

More work on eliminating references to test_db_util.sa_session.

2014-01-11 22:40:18 -06:00

test_history_functions.py

More work on eliminating references to test_db_util.sa_session.

2014-01-11 22:40:18 -06:00

test_library_features.py

More work on eliminating references to test_db_util.sa_session.

2014-01-11 22:40:18 -06:00

test_library_security.py

More work on eliminating references to test_db_util.sa_session.

2014-01-11 22:40:18 -06:00

test_library_templates.py

More work on eliminating references to test_db_util.sa_session.

2014-01-11 22:40:18 -06:00

test_metadata_editing.py

More work on eliminating references to test_db_util.sa_session.

2014-01-11 22:40:18 -06:00

test_sample_tracking.py

More work on eliminating references to test_db_util.sa_session.

2014-01-11 22:40:18 -06:00

test_tags.py

More work on eliminating references to test_db_util.sa_session.

2014-01-11 22:40:18 -06:00

test_toolbox.py

Allow tools to test runtime discovered datasets.

2014-03-29 17:11:17 -05:00

test_user_info.py

More work on eliminating references to test_db_util.sa_session.

2014-01-11 22:40:18 -06:00

workflow.py

Allow tools to test runtime discovered datasets.

2014-03-29 17:11:17 -05:00