Guruprasad Anada cb875eae2e Fix functional test for fastx_artifacts_filter tool.

2009-09-25 10:45:10 -04:00

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annotation_profiler

removing debuging statements from annotation_profiler that were never inteded to go out

2009-09-04 10:49:02 -04:00

data_destination

merging from central

2008-10-28 11:28:15 -04:00

data_source

Get rid of the hacky "alternate path" stuff used by the upload tool and fix setting metadata when using autodetect and set_metadata_externally

2009-09-10 14:52:38 -04:00

emboss_5

Forgot to eliminate the emboss path...

2008-04-25 19:07:26 +00:00

encode

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

evolution

Changing an 'and' to 'or' in SNP mutate codon tool error checking.

2009-09-22 11:40:41 -04:00

extract

Change dbkey of unmapped liftover dataset to the input dataset's dbkey.

2009-08-21 11:40:51 -04:00

fasta_tools

Fixed for functional tests for new version of fasta_filter_by_length tool contributed by James Casbon.

2009-07-23 14:31:11 -04:00

fastx_toolkit

Fix functional test for fastx_artifacts_filter tool.

2009-09-25 10:45:10 -04:00

filters

Modified sort tool to fix backwards compatibility. Reverted catWrapper tool back to old version before recent changes (for backwards compatibility).

2009-09-24 13:54:12 -04:00

hyphy

Fixes to get functional tests working.

2009-02-03 18:34:27 -05:00

maf

Add a MAF to Interval converter that produces a set of intervals with sequence data.

2009-09-17 11:47:37 -04:00

metag_tools

Second pass of help and interface updates. Not done yet...

2009-09-22 08:59:36 -04:00

new_operations

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

next_gen_conversion

Modified solid to fastq converter tool to specify path to perl script that does conversion

2009-09-24 14:09:17 -04:00

plotting

Fix bar chart output format.

2009-08-03 16:38:27 -04:00

regVariation

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

samtools

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

solid_tools

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

sr_mapping

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

stats

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

taxonomy

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

validation

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

visualization

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00