galaxy

admin

Bug fix for rendring a select field for external services and method name spelling improvement.

2011-01-14 11:33:50 -05:00

common

Workflow/History targets for individual samples.

2011-01-17 14:58:02 -05:00

dataset

Copy datasets feature:

2011-01-03 18:32:02 -05:00

external_services

Some minor cleanup for 4822:4ab987b90e44.

2011-01-11 08:34:02 -05:00

genetrack

Added the missing "invalid.html" for GeneTrack.

2009-01-29 11:11:15 -05:00

history

Refactoring of history grid code to better support history switching both with and without panels.

2011-01-16 16:18:20 -05:00

library

Workflow/History targets for individual samples.

2011-01-17 14:58:02 -05:00

mobile

Abstract the code supporting data library templates so templates can be used in sample tracking as well. These templates now provide support for handling information about sample runs. A RequestType can have a single association to a Run, with the run details template made available to all samples. A Sample can have many associations to Runs.

2010-12-09 14:52:27 -05:00

page

Make tool_search always the top option even after toggle. Extend make_popup_menus() to create 'label' elements when no href is specified. Added download link for original dataset when there is a dropdown for the download. Call make_popup_menus() when loading embedded items in pages.

2010-11-18 19:42:14 -05:00

requests

cleanup

2011-01-18 10:57:28 -05:00

root

Clean up and improve the interface to copy datasets between histories:

2010-12-21 21:10:10 -05:00

tracks

Improve display of page numbers on grids so that not all page numbers are always shown. Add parameter 'num_page_links' to grid framework so that grid can control how many page links are shown.

2011-01-10 15:14:16 -05:00

user

Show Galaxy masthead as often as possible using the following approaches: (a) when the galaxy_main frame is not present, all links targeting the galaxy_main frame include the parameter and value 'use_panels=True'; (b) logout links target galaxy_main rather than _top; and (c) enable custom dbkeys page is work with and without frames. Also enable 'Saved Histories' grid to work outside of galaxy_main panel.

2011-01-16 15:48:58 -05:00

visualization

trackster: Fix shared visualizations

2010-12-10 17:42:08 -05:00

webapps

Keep the demo sequencer registry actions pristine throughout the session, and load the sequencer image into the browser cache so that it will be displayed.

2011-01-12 15:44:29 -05:00

workflow

Improved Workflow -> New History code to allow for text input of the new history name.

2011-01-17 20:38:29 -05:00

base_panels.mako

Display the average rating for each tool the tool grid in the Galaxy Tool Shed. Add a common method for rendering the star rating, and clean up template code by using this new common method.

2010-08-30 12:54:58 -04:00

base.mako

Add 'metas()' %def to base.mako, to allow subclassing templates to declare additional <meta/> tags.

2010-03-12 12:03:25 -05:00

community_rating.mako

Add CommunityRatingColumn to grid infrastructure and add 'Community Rating' columns to published item grids. Community ratings are computed on demand for now, but this may need to change in the future.

2010-09-08 11:43:25 -04:00

display_base.mako

Make published items set the "Shared Data" tab as the active tab

2010-10-07 15:33:54 -04:00

display_common.mako

First pass of the new sequencer_type & sequencer framework

2010-12-20 10:50:50 -05:00

embed_base.mako

Fixes to item embedding in pages. In particular, fixed the editor color changes that were occurring when moving the cursor through embedded items.

2010-03-16 12:00:10 -04:00

export_base.mako

Make it easier to move workflows directly from one Galaxy instance to another. Workflow download/export page now provides URL that can be used to directly import a workflow from one instance to another.

2010-11-29 14:16:49 -06:00

form.mako

Add history import and export functionality to Galaxy. Options for exporting the current history to a file or importing a history from a file are now listed in the history options menu. Also modified the form builder to support file inputs.

2010-06-03 12:17:34 -04:00

grid_base_async.mako

Improve display of page numbers on grids so that not all page numbers are always shown. Add parameter 'num_page_links' to grid framework so that grid can control how many page links are shown.

2011-01-10 15:14:16 -05:00

grid_base.mako

Show Galaxy masthead as often as possible using the following approaches: (a) when the galaxy_main frame is not present, all links targeting the galaxy_main frame include the parameter and value 'use_panels=True'; (b) logout links target galaxy_main rather than _top; and (c) enable custom dbkeys page is work with and without frames. Also enable 'Saved Histories' grid to work outside of galaxy_main panel.

2011-01-16 15:48:58 -05:00

grid_common.mako

trackster: Fix shared visualizations

2010-10-25 18:49:26 -04:00

ind_share_base.mako

Enhancements and fixes for sharing framework: (a) sharing/publishing webpages can now be displayed in frames; (b) sharing webpages can display messages; (c) workflow sharing highlights correct tab; (d) history sharing for individual users now uses sharing framework; (e) item sharing with individual users now uses common template.

2010-08-16 17:05:59 -04:00

message.mako

Fix form.mako and message.mako to use the correct webapp version of base_panels.mako.

2010-05-28 09:51:57 -04:00

no_access.mako

You can now require that users log in to use Galaxy. The sample config is way different but it's only because I cleaned it up a bit. The only new options are require_login/allow_user_creation.

2008-11-20 15:14:47 -05:00

panels.mako

Decouple the masthead from base_panels.mako.

2010-03-31 13:11:05 -04:00

sharing_base.mako

Make published items set the "Shared Data" tab as the active tab

2010-10-07 15:33:54 -04:00

tagging_common.mako

- Refactored tagging/autocomplete JS, fixing bugs regarding leaving the tagging box

2010-09-17 17:51:11 -04:00

tool_executed.mako

Typos 'succesfully' -> 'successfully' fixed in tool_executed.mako

2010-09-15 17:11:10 -04:00

tool_form.mako

Add a new "Files uploaded via FTP" grid to the upload form and related parameter types, form fields, etc.

2010-11-05 11:04:50 -04:00