mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Enhancements and fixes for sharing framework: (a) sharing/publishing webpages can now be displayed in frames; (b) sharing webpages can display messages; (c) workflow sharing highlights correct tab; (d) history sharing for individual users now uses sharing framework; (e) item sharing with individual users now uses common template.
This commit is contained in:
Jeremy Goecks
@@ -1114,16 +1114,18 @@ class HistoryController( BaseController, Sharable, UsesAnnotations, UsesItemRati
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history.importable = history.published = False
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elif 'unshare_user' in kwargs:
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user = trans.sa_session.query( trans.app.model.User ).get( trans.security.decode_id( kwargs[ 'unshare_user' ] ) )
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if not user:
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message = 'History (%s) does not seem to be shared with user (%s)' % ( history.name, user.email )
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return trans.fill_template( 'history/sharing.mako',
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histories=histories,
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message=message,
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status='error' )
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# Look for and delete sharing relation for history-user.
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deleted_sharing_relation = False
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husas = trans.sa_session.query( trans.app.model.HistoryUserShareAssociation ).filter_by( user=user, history=history ).all()
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if husas:
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deleted_sharing_relation = True
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for husa in husas:
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trans.sa_session.delete( husa )
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trans.sa_session.delete( husa )
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if not deleted_sharing_relation:
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message = "History '%s' does not seem to be shared with user '%s'" % ( history.name, user.email )
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return trans.fill_template( '/sharing_base.mako', item=history,
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message=message, status='error' )
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# Legacy issue: histories made accessible before recent updates may not have a slug. Create slug for any histories that need them.
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for history in histories:
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@@ -1188,7 +1190,7 @@ class HistoryController( BaseController, Sharable, UsesAnnotations, UsesItemRati
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elif not send_to_err:
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# User seems to be sharing an empty history
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send_to_err = "You cannot share an empty history. "
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return trans.fill_template( "/history/share.mako", histories=histories, email=email, send_to_err=send_to_err )
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return trans.fill_template( "/ind_sharing_base.mako", histories=histories, email=email, send_to_err=send_to_err )
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@web.expose
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@web.require_login( "share restricted histories with other users" )
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@@ -470,11 +470,11 @@ class PageController( BaseController, Sharable, UsesAnnotations, UsesHistory,
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session.flush()
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return trans.fill_template( "/sharing_base.mako",
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item=page )
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item=page, use_panels=True )
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@web.expose
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@web.require_login( "use Galaxy pages" )
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def share( self, trans, id, email="" ):
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def share( self, trans, id, email="", use_panels=False ):
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""" Handle sharing with an individual user. """
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msg = mtype = None
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page = trans.sa_session.query( model.Page ).get( trans.security.decode_id( id ) )
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@@ -503,11 +503,12 @@ class PageController( BaseController, Sharable, UsesAnnotations, UsesHistory,
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session.flush()
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trans.set_message( "Page '%s' shared with user '%s'" % ( page.title, other.email ) )
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return trans.response.send_redirect( url_for( controller='page', action='sharing', id=id ) )
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return trans.fill_template( "/share_base.mako",
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return trans.fill_template( "/ind_share_base.mako",
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message = msg,
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messagetype = mtype,
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item=page,
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email=email )
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email=email,
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use_panels=use_panels )
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@web.expose
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@web.require_login()
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@@ -225,11 +225,11 @@ class VisualizationController( BaseController, Sharable, UsesAnnotations, UsesVi
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session.flush()
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return trans.fill_template( "/sharing_base.mako", item=visualization )
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return trans.fill_template( "/sharing_base.mako", item=visualization, use_panels=True )
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@web.expose
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@web.require_login( "share Galaxy visualizations" )
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def share( self, trans, id=None, email="", **kwd ):
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def share( self, trans, id=None, email="", use_panels=False ):
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""" Handle sharing a visualization with a particular user. """
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msg = mtype = None
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visualization = trans.sa_session.query( model.Visualization ).get( trans.security.decode_id( id ) )
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@@ -258,11 +258,12 @@ class VisualizationController( BaseController, Sharable, UsesAnnotations, UsesVi
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session.flush()
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trans.set_message( "Visualization '%s' shared with user '%s'" % ( visualization.title, other.email ) )
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return trans.response.send_redirect( url_for( action='sharing', id=id ) )
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return trans.fill_template( "/share_base.mako",
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return trans.fill_template( "/ind_share_base.mako",
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message = msg,
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messagetype = mtype,
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item=visualization,
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email=email )
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email=email,
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use_panels=use_panels )
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@web.expose
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@@ -239,7 +239,7 @@ class WorkflowController( BaseController, Sharable, UsesStoredWorkflow, UsesAnno
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@web.expose
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@web.require_login( "use Galaxy workflows" )
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def share( self, trans, id, email="" ):
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def share( self, trans, id, email="", use_panels=False ):
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msg = mtype = None
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# Load workflow from database
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stored = self.get_stored_workflow( trans, id )
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@@ -268,11 +268,12 @@ class WorkflowController( BaseController, Sharable, UsesStoredWorkflow, UsesAnno
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session.flush()
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trans.set_message( "Workflow '%s' shared with user '%s'" % ( stored.name, other.email ) )
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return trans.response.send_redirect( url_for( controller='workflow', action='sharing', id=id ) )
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return trans.fill_template( "workflow/share.mako",
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return trans.fill_template( "/ind_share_base.mako",
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message = msg,
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messagetype = mtype,
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stored=stored,
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email=email )
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item=stored,
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email=email,
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use_panels=use_panels )
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@web.expose
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@web.require_login( "use Galaxy workflows" )
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@@ -312,8 +313,7 @@ class WorkflowController( BaseController, Sharable, UsesStoredWorkflow, UsesAnno
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session.flush()
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return trans.fill_template( "/sharing_base.mako",
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item=stored )
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return trans.fill_template( "/workflow/sharing.mako", use_panels=True, item=stored )
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@web.expose
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@web.require_login( "to import a workflow", use_panels=True )
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@@ -1,71 +0,0 @@
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<%inherit file="/base.mako"/>
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<%namespace file="/message.mako" import="render_msg" />
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<%namespace file="/display_base.mako" import="get_history_link" />
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##<h2>Import via link</h2>
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%if message:
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${render_msg( message, status )}
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%endif
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<h2>Histories that you've shared with others or enabled to be imported</h2>
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%if not histories:
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You have no histories that you've shared with others or enabled to be imported
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%else:
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%for history in histories:
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<div class="toolForm">
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<div class="toolFormTitle">History '${history.get_display_name()}' shared with</div>
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<div class="toolFormBody">
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<div class="form-row">
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<div style="float: right;">
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<a class="action-button" href="${h.url_for( controller='history', action='share', id=trans.security.encode_id( history.id ) )}">
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<span>Share with another user</span>
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</a>
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</div>
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</div>
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%if history.users_shared_with:
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%for i, association in enumerate( history.users_shared_with ):
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<% user = association.user %>
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<div class="form-row">
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<a class="action-button" href="${h.url_for( controller='history', action='sharing', id=trans.security.encode_id( history.id ), unshare_user=trans.security.encode_id( user.id ) )}">Unshare</a>
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${user.email}
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</div>
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%endfor
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%endif
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%if history.importable:
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<div class="form-row">
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<% url = get_history_link( history, True )%>
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<a href="${url}" target="_blank">${url}</a>
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<div class="toolParamHelp" style="clear: both;">
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Send the above link to users as an easy way for them to view the history.
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</div>
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</div>
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<div class="form-row">
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<% url = h.url_for( controller='history', action='imp', id=trans.security.encode_id(history.id), qualified=True ) %>
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<a href="${url}">${url}</a>
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<div class="toolParamHelp" style="clear: both;">
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Send the above link to users as an easy way for them to import the history, making a copy of their own.
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</div>
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</div>
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<div class="form-row">
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<form action="${h.url_for( controller='history', action='sharing', id=trans.security.encode_id( history.id ) )}" method="POST">
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<div class="form-row">
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<input class="action-button" type="submit" name="disable_import_via_link" value="Disable import via link">
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</div>
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</form>
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</div>
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%else:
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<form action="${h.url_for( action='sharing', id=trans.security.encode_id(history.id) )}" method="POST">
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<div class="form-row">
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<input class="action-button" type="submit" name="enable_import_via_link" value="Enable import via link">
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<div class="toolParamHelp" style="clear: both;">
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Click to generate a URL that you can give to a user to allow them to import this history, making a copy of their own
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</div>
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</div>
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</form>
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%endif
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</div>
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</div>
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%endfor
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%endif
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@@ -0,0 +1,108 @@
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##
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## Base template for sharing an item with an individual user. Template expects the following parameters:
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## (a) item - item to be shared.
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##
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<%!
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def inherit(context):
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if context.get('use_panels'):
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if context.get('webapp'):
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webapp = context.get('webapp')
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else:
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webapp = 'galaxy'
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return '/webapps/%s/base_panels.mako' % webapp
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else:
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return '/base.mako'
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%>
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<%inherit file="${inherit(context)}"/>
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<%namespace file="./display_common.mako" import="*" />
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##
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## Page methods.
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##
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<%def name="init()">
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<%
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self.has_left_panel=False
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self.has_right_panel=False
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self.message_box_visible=False
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self.overlay_visible=False
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self.message_box_class=""
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self.active_view=""
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self.body_class=""
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%>
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</%def>
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<%def name="stylesheets()">
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${parent.stylesheets()}
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<style>
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## If page is displayed in panels, pad from edges for readabilit.
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%if context.get('use_panels'):
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div#center
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{
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padding: 10px;
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}
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%endif
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</style>
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</%def>
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<%def name="center_panel()">
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${self.body()}
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</%def>
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<%def name="body()">
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%if message:
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<%
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if messagetype is UNDEFINED:
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mt = "done"
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else:
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mt = messagetype
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%>
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<p />
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<div class="${mt}message">
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${message}
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</div>
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<p />
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%endif
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<%
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#
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# Setup and variables needed for page.
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#
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# Get class name strings.
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item_class_name = get_class_display_name( item.__class__ )
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item_class_name_lc = item_class_name.lower()
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item_class_plural_name = get_class_plural_display_name( item.__class__ )
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item_class_plural_name_lc = item_class_plural_name.lower()
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# Get item name.
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item_name = get_item_name(item)
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%>
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<div class="toolForm">
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<div class="toolFormTitle">Share ${item_class_name} '${item_name}' with Another User</div>
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<div class="toolFormBody">
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<form action="${h.url_for( action='share', id=trans.security.encode_id( item.id ) )}" method="POST">
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<div class="form-row">
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<label>
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Email address of user to share with
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</label>
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<div style="float: left; width: 250px; margin-right: 10px;">
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<input type="text" name="email" value="${email}" size="40">
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</div>
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<div style="clear: both"></div>
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</div>
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<div class="form-row">
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<input type="submit" value="Share"></input>
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</div>
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<div class="form-row">
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<a href="${h.url_for( action="sharing", id=trans.security.encode_id( item.id ) )}">Back to ${item_class_name}'s Sharing Home</a>
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</div>
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</form>
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</div>
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</div>
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</div>
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</%def>
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@@ -1,36 +0,0 @@
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<%inherit file="/base.mako"/>
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%if message:
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<%
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if messagetype is UNDEFINED:
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mt = "done"
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else:
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mt = messagetype
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%>
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<p />
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<div class="${mt}message">
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${message}
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</div>
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<p />
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%endif
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<div class="toolForm">
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<div class="toolFormTitle">Share page '${item.title}'</div>
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<div class="toolFormBody">
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<form action="${h.url_for( action='share', id=trans.security.encode_id( item.id ) )}" method="POST">
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<div class="form-row">
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<label>
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Email address of user to share with
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</label>
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<div style="float: left; width: 250px; margin-right: 10px;">
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<input type="text" name="email" value="${email}" size="40">
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</div>
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<div style="clear: both"></div>
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</div>
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<div class="form-row">
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<input type="submit" value="Share"></input>
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</div>
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</form>
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</div>
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</div>
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</div>
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+60
-12
@@ -1,16 +1,39 @@
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##
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## Base template for sharing an item. Template expects the following parameters:
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## Base template for sharing/publishing/exporting an item. Template expects the following parameters:
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## (a) item - item to be shared.
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##
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<%inherit file="/base.mako"/>
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<%!
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def inherit(context):
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if context.get('use_panels', False) == True:
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if context.get('webapp'):
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webapp = context.get('webapp')
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else:
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webapp = 'galaxy'
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return '/webapps/%s/base_panels.mako' % webapp
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else:
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return '/base.mako'
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%>
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<%inherit file="${inherit(context)}"/>
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<%namespace file="./display_common.mako" import="*" />
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<%namespace file="/message.mako" import="render_msg" />
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##
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## Page methods.
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##
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<%def name="init()">
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<%
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self.has_left_panel=False
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self.has_right_panel=False
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self.message_box_visible=False
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self.overlay_visible=False
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self.message_box_class=""
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self.active_view=""
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self.body_class=""
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%>
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</%def>
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<%def name="title()">
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Sharing and Publishing ${get_class_display_name( item.__class__ )} '${get_item_name( item )}'
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</%def>
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@@ -57,18 +80,38 @@
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<%def name="stylesheets()">
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${parent.stylesheets()}
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<style>
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div.indent
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## Put some whitespace before each section header.
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h3
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{
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margin-left: 1em;
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margin-top: 2em;
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}
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input.action-button
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{
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margin-left: 0;
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}
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## If page is displayed in panels, pad from edges for readabilit.
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%if context.get('use_panels'):
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div#center
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{
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padding: 10px;
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}
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%endif
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</style>
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</%def>
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<%def name="center_panel()">
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${self.body()}
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</%def>
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<%def name="body()">
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## Set use_panels var for use in page's URLs.
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<% use_panels = context.get('use_panels', False) %>
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## Render message.
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%if message:
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${render_msg( message, status )}
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%endif
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<%
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#
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# Setup and variables needed for page.
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@@ -79,8 +122,10 @@
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item_class_name_lc = item_class_name.lower()
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item_class_plural_name = get_class_plural_display_name( item.__class__ )
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item_class_plural_name_lc = item_class_plural_name.lower()
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# Get item name.
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item_name = get_item_name(item)
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%>
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<% item_name = get_item_name(item) %>
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<h2>Sharing and Publishing ${item_class_name} '${item_name}'</h2>
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@@ -103,7 +148,6 @@
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</form>
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%else:
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## User has a public username, so private sharing and publishing options.
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||||
<div class="indent" style="margin-top: 2em">
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<h3>Making ${item_class_name} Accessible via Link and Publishing It</h3>
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<div>
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||||
@@ -174,8 +218,10 @@
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</form>
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||||
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%endif
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</div>
|
||||
|
||||
##
|
||||
## Sharing with Galaxy users.
|
||||
##
|
||||
<h3>Sharing ${item_class_name} with Specific Users</h3>
|
||||
|
||||
<div>
|
||||
@@ -183,7 +229,7 @@
|
||||
|
||||
<p>
|
||||
The following users will see this ${item_class_name_lc} in their ${item_class_name_lc} list and will be
|
||||
able to run/view and import it.
|
||||
able to view, import, and run it.
|
||||
</p>
|
||||
|
||||
<table class="colored" border="0" cellspacing="0" cellpadding="0" width="100%">
|
||||
@@ -200,7 +246,7 @@
|
||||
</td>
|
||||
<td>
|
||||
<div popupmenu="user-${i}-popup">
|
||||
<a class="action-button" href="${h.url_for( action='sharing', id=trans.security.encode_id( item.id ), unshare_user=trans.security.encode_id( user.id ) )}">Unshare</a>
|
||||
<a class="action-button" href="${h.url_for( action='sharing', id=trans.security.encode_id( item.id ), unshare_user=trans.security.encode_id( user.id ), use_panels=use_panels )}">Unshare</a>
|
||||
</div>
|
||||
</td>
|
||||
</tr>
|
||||
@@ -208,7 +254,8 @@
|
||||
</table>
|
||||
|
||||
<p>
|
||||
<a class="action-button" href="${h.url_for( action='share', id=trans.security.encode_id(item.id) )}">
|
||||
<a class="action-button"
|
||||
href="${h.url_for( action='share', id=trans.security.encode_id(item.id), use_panels=use_panels )}">
|
||||
<span>Share with another user</span>
|
||||
</a>
|
||||
|
||||
@@ -216,7 +263,8 @@
|
||||
|
||||
<p>You have not shared this ${item_class_name_lc} with any users.</p>
|
||||
|
||||
<a class="action-button" href="${h.url_for( action='share', id=trans.security.encode_id(item.id) )}">
|
||||
<a class="action-button"
|
||||
href="${h.url_for( action='share', id=trans.security.encode_id(item.id), use_panels=use_panels )}">
|
||||
<span>Share with a user</span>
|
||||
</a>
|
||||
<br>
|
||||
|
||||
@@ -1,36 +0,0 @@
|
||||
<%inherit file="/base.mako"/>
|
||||
|
||||
%if message:
|
||||
<%
|
||||
if messagetype is UNDEFINED:
|
||||
mt = "done"
|
||||
else:
|
||||
mt = messagetype
|
||||
%>
|
||||
<p />
|
||||
<div class="${mt}message">
|
||||
${message}
|
||||
</div>
|
||||
<p />
|
||||
%endif
|
||||
|
||||
<div class="toolForm">
|
||||
<div class="toolFormTitle">Share workflow '${stored.name}'</div>
|
||||
<div class="toolFormBody">
|
||||
<form action="${h.url_for( action='share', id=trans.security.encode_id(stored.id) )}" method="POST">
|
||||
<div class="form-row">
|
||||
<label>
|
||||
Email address of user to share with
|
||||
</label>
|
||||
<div style="float: left; width: 250px; margin-right: 10px;">
|
||||
<input type="text" name="email" value="${email}" size="40">
|
||||
</div>
|
||||
<div style="clear: both"></div>
|
||||
</div>
|
||||
<div class="form-row">
|
||||
<input type="submit" value="Share"></input>
|
||||
</div>
|
||||
</form>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
@@ -1,161 +1,13 @@
|
||||
<%inherit file="/base.mako"/>
|
||||
<%! from galaxy import model %>
|
||||
<%inherit file="/sharing_base.mako"/>
|
||||
|
||||
##
|
||||
## Page methods.
|
||||
##
|
||||
|
||||
<%def name="title()">
|
||||
Sharing Workflow '${stored.name}'
|
||||
</%def>
|
||||
|
||||
<%def name="stylesheets()">
|
||||
${parent.stylesheets()}
|
||||
<style>
|
||||
div.indent
|
||||
{
|
||||
margin-left: 1em;
|
||||
}
|
||||
input.action-button
|
||||
{
|
||||
margin-left: 0;
|
||||
}
|
||||
</style>
|
||||
</%def>
|
||||
|
||||
## Get display name for a class.
|
||||
<%def name="get_class_display_name( a_class )">
|
||||
<%def name="init()">
|
||||
<%
|
||||
if a_class is model.History:
|
||||
return "History"
|
||||
elif a_class is model.StoredWorkflow:
|
||||
return "Workflow"
|
||||
elif a_class is model.Page:
|
||||
return "Page"
|
||||
parent.init()
|
||||
self.active_view="workflow"
|
||||
%>
|
||||
</%def>
|
||||
|
||||
##
|
||||
## Page content.
|
||||
##
|
||||
<%def name="center_panel()">
|
||||
${parent.body()}
|
||||
</%def>
|
||||
|
||||
<h2>Sharing Workflow '${stored.name}'</h2>
|
||||
|
||||
<div class="indent" style="margin-top: 2em">
|
||||
<h3>Making Workflow Accessible via Link and Publishing It</h3>
|
||||
|
||||
<div class="indent">
|
||||
%if stored.importable:
|
||||
<%
|
||||
item_status = "accessible via link"
|
||||
if stored.published:
|
||||
item_status = item_status + " and published"
|
||||
%>
|
||||
This workflow <strong>${item_status}</strong>.
|
||||
<div class="indent">
|
||||
<p>Anyone can view and import this workflow by visiting the following URL:
|
||||
<% url = h.url_for( action='display_by_username_and_slug', username=trans.get_user().username, slug=stored.slug, qualified=True ) %>
|
||||
<blockquote>
|
||||
<a href="${url}">${url}</a>
|
||||
</blockquote>
|
||||
|
||||
%if stored.published:
|
||||
This workflow is publicly listed and searchable in Galaxy's <a href='${h.url_for( action='list_published' )}'>Published Workflows</a> section.
|
||||
%endif
|
||||
</div>
|
||||
|
||||
<p>You can:
|
||||
<div class="indent">
|
||||
<form action="${h.url_for( action='sharing', id=trans.security.encode_id(stored.id) )}"
|
||||
method="POST">
|
||||
%if not stored.published:
|
||||
## Item is importable but not published. User can disable importable or publish.
|
||||
<input class="action-button" type="submit" name="disable_link_access" value="Disable Access to Workflow Link">
|
||||
<div class="toolParamHelp">Disables workflow's link so that it is not accessible.</div>
|
||||
<br>
|
||||
<input class="action-button" type="submit" name="publish" value="Publish Workflow" method="POST">
|
||||
<div class="toolParamHelp">Publishes the workflow to Galaxy's <a href='${h.url_for( action='list_published' )}'>Published Workflows</a> section, where it is publicly listed and searchable.</div>
|
||||
|
||||
<br>
|
||||
%else: ## stored.published == True
|
||||
## Item is importable and published. User can unpublish or disable import and unpublish.
|
||||
<input class="action-button" type="submit" name="unpublish" value="Unpublish Workflow">
|
||||
<div class="toolParamHelp">Removes workflow from Galaxy's <a href='${h.url_for( action='list_published' )}'>Published Workflows</a> section so that it is not publicly listed or searchable.</div>
|
||||
<br>
|
||||
<input class="action-button" type="submit" name="disable_link_access_and_unpublish" value="Disable Access to Workflow via Link and Unpublish">
|
||||
<div class="toolParamHelp">Disables workflow's link so that it is not accessible and removes workflow from Galaxy's <a href='${h.url_for( action='list_published' )}' target='_top'>Published Workflows</a> section so that it is not publicly listed or searchable.</div>
|
||||
%endif
|
||||
|
||||
</form>
|
||||
</div>
|
||||
|
||||
%else:
|
||||
|
||||
This workflow is currently restricted so that only you and the users listed below can access it. You can:
|
||||
<p>
|
||||
<form action="${h.url_for( action='sharing', id=trans.security.encode_id(stored.id) )}" method="POST">
|
||||
<input class="action-button" type="submit" name="make_accessible_via_link" value="Make Workflow Accessible via Link">
|
||||
<div class="toolParamHelp">Generates a web link that you can share with other people so that they can view and import the workflow.</div>
|
||||
|
||||
<br>
|
||||
<input class="action-button" type="submit" name="make_accessible_and_publish" value="Make Workflow Accessible and Publish" method="POST">
|
||||
<div class="toolParamHelp">Makes the workflow accessible via link (see above) and publishes the workflow to Galaxy's <a href='${h.url_for( action='list_published' )}' target='_top'>Published Workflows</a> section, where it is publicly listed and searchable.</div>
|
||||
</form>
|
||||
|
||||
%endif
|
||||
</div>
|
||||
|
||||
<h3>Sharing Workflow with Specific Users</h3>
|
||||
|
||||
<div class="indent">
|
||||
%if stored.users_shared_with:
|
||||
|
||||
<p>
|
||||
The following users will see this workflow in their workflow list and will be
|
||||
able to run/view and import it.
|
||||
</p>
|
||||
|
||||
<ul class="manage-table-actions">
|
||||
<li>
|
||||
<a class="action-button" href="${h.url_for( action='share', id=trans.security.encode_id(stored.id) )}">
|
||||
<span>Share with another user</span>
|
||||
</a>
|
||||
</li>
|
||||
</ul>
|
||||
|
||||
<table class="colored" border="0" cellspacing="0" cellpadding="0" width="100%">
|
||||
<tr class="header">
|
||||
<th>Email</th>
|
||||
<th></th>
|
||||
</tr>
|
||||
%for i, association in enumerate( stored.users_shared_with ):
|
||||
<% user = association.user %>
|
||||
<tr>
|
||||
<td>
|
||||
${user.email}
|
||||
<a id="user-${i}-popup" class="popup-arrow" style="display: none;">▼</a>
|
||||
</td>
|
||||
<td>
|
||||
<div popupmenu="user-${i}-popup">
|
||||
<a class="action-button" href="${h.url_for( id=trans.security.encode_id( stored.id ), unshare_user=trans.security.encode_id( user.id ) )}">Unshare</a>
|
||||
</div>
|
||||
</td>
|
||||
</tr>
|
||||
%endfor
|
||||
</table>
|
||||
|
||||
%else:
|
||||
|
||||
<p>You have not shared this workflow with any users.</p>
|
||||
|
||||
<a class="action-button" href="${h.url_for( action='share', id=trans.security.encode_id(stored.id) )}">
|
||||
<span>Share with another user</span>
|
||||
</a>
|
||||
<br>
|
||||
|
||||
%endif
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<p><br><br>
|
||||
<a href=${h.url_for( action="list" )}>Back to Workflows List</a>
|
||||
Reference in New Issue
Block a user