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71 lines
2.7 KiB
Python
71 lines
2.7 KiB
Python
"""Integration tests for tool data tables that require special configuration.
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This file checks API endpoints that require different non-default Galaxy
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configuration options, in particular the DELETE endpoint.
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To avoid altering the '.loc' files in test/functional/tool-data, these files are
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copied to a temp directory and then used by the integration test.
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"""
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import json
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import os
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import shutil
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import time
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from requests import delete
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from galaxy_test.base.populators import DatasetPopulator
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from galaxy_test.driver import integration_util
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THIS_DIR = os.path.dirname(__file__)
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SOURCE_TOOL_DATA_DIRECTORY = os.path.join(THIS_DIR, os.pardir, "functional", "tool-data")
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class AdminToolDataIntegrationTestCase(integration_util.IntegrationTestCase):
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require_admin_user = True
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def setUp(self):
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super().setUp()
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self.dataset_populator = DatasetPopulator(self.galaxy_interactor)
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@classmethod
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def configure_temp_tool_data_dir(cls):
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cls.temp_tool_data_dir = cls.temp_config_dir("tool-data")
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cls.temp_tool_data_tables_file = os.path.join(cls.temp_tool_data_dir, "sample_tool_data_tables.xml")
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shutil.copytree(SOURCE_TOOL_DATA_DIRECTORY, cls.temp_tool_data_dir)
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cls._test_driver.temp_directories.append(cls.temp_tool_data_dir)
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@classmethod
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def handle_galaxy_config_kwds(cls, config):
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cls.configure_temp_tool_data_dir()
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config["tool_data_path"] = cls.temp_tool_data_dir
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config["tool_data_table_config_path"] = cls.temp_tool_data_tables_file
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def test_admin_delete_data_table_entry(self):
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show_response = self._get("tool_data/testbeta")
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original_count = len(show_response.json()["fields"])
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history_id = self.dataset_populator.new_history()
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payload = self.dataset_populator.run_tool_payload(
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tool_id="data_manager",
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inputs={"ignored_value": "moo"},
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history_id=history_id,
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)
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create_response = self._post("tools", data=payload)
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create_response.raise_for_status()
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self.dataset_populator.wait_for_history(history_id, assert_ok=True)
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time.sleep(2)
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show_response = self._get("tool_data/testbeta")
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updated_fields = show_response.json()["fields"]
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self.assertEquals(len(updated_fields), original_count + 1)
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new_field = updated_fields[-1]
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url = self._api_url(f"tool_data/testbeta?key={self.galaxy_interactor.api_key}")
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delete_response = delete(url, data=json.dumps({"values": "\t".join(new_field)}))
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delete_response.raise_for_status()
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time.sleep(2)
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show_response = self._get("tool_data/testbeta")
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show_response.raise_for_status()
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updated_fields = show_response.json()["fields"]
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assert len(updated_fields) == original_count
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