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c46ff97123d35904e822476134e9f01ac3deb668
galaxy/test/integration
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John Chilton c46ff97123 FastAPI/ASGI CORS handling. 
- Some tests to clarify existing behavior (at least where they don't diverge). Including frameworks enhancements to allow integration tests to force on server type or the other.
- In WSGI-land return a 400 if an invalid origin is specified (to bring inline with CORSMiddleware).
- In ASGI-land, override CORSMiddleware to use Galaxy's logic for checking an origin against the config object.
- When building a WSGI webapp for FastAPI, skip CORS handling at that level so it can be handled by FastAPI app.
2021-01-27 19:55:48 -05:00
..
chained_dyndest_rules
Added integration test for rules_module overrides
2018-11-16 12:27:32 +05:30
cloudauthz
Minor test cleanup
2020-09-18 12:28:33 +02:00
delay_rules
Integration test for job recovery (before and after handler has picked it up).
2018-08-21 15:17:12 -04:00
objectstore
mypy for test/
2020-12-25 17:38:51 -05:00
objectstore_selection_rules
Allow configuring object stores on a per-job-destination basis.
2018-08-06 11:29:08 -04:00
resubmission_rules
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
webdav
Pluggable URI handling across upload components.
2020-07-14 10:09:50 -04:00
__init__.py
Fix things found by @mvdbeek
2016-04-05 14:59:09 -04:00
chained_dyndest_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
conftest.py
Fixed import order
2020-04-07 13:51:25 -04:00
delay_job_conf.yml
add default to test job_conf
2019-05-08 11:55:13 -04:00
dockerized_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
embedded_pulsar_docker_job_conf.yml
Allow remote container port monitoring for ITs.
2020-02-19 09:53:10 -05:00
embedded_pulsar_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
embedded_pulsar_metadata_job_conf.yml
Allow setting metadata_strategy per destination
2020-07-04 19:20:53 +02:00
embedded_pulsar_singularity_job_conf.yml
Dockerized Pulsar tests.
2019-09-11 20:37:08 -04:00
file_sources_conf.yml
Pluggable URI handling across upload components.
2020-07-14 10:09:50 -04:00
handler_template_job_conf.xml
Integration tests for handler assignment methods
2019-01-04 16:46:29 -05:00
io_injection_job_conf.yml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_default_job_conf.yml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_dynamic_job_conf.xml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_job_conf.yml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_job_resource_parameters_conf.xml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_pulsar_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
resubmission_runners.py
mypy for test/
2020-12-25 17:38:51 -05:00
resubmission_small_memory_job_conf.xml
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
resubmission_small_memory_resubmission_to_large_job_conf.xml
Tool-centric annotation of out of memory errors.
2017-12-22 09:08:18 -05:00
resubmission_tool_detected_always_error_job_conf.xml
Fix resubmission on tool error detection.
2018-11-23 14:32:04 +01:00
resubmission_tool_detected_resubmit_job_conf.xml
Fix resubmission on tool error detection.
2018-11-23 14:32:04 +01:00
sets_tmp_dir_expression_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
sets_tmp_dir_to_true_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
simple_job_conf.xml
Fix failing integration test.
2019-05-03 08:38:33 -04:00
singularity_job_conf.xml
Cleanup integration test configuration code.
2019-05-02 08:45:11 -04:00
test_chained_dynamic_destinations.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
test_change_datatype_with_store_by_id.py
Move test_assign_column_pja to own class
2020-08-11 14:53:53 +02:00
test_cli_runners.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_config_defaults.py
Fix integration test
2021-01-21 14:10:49 -05:00
test_config_options_users.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
test_config_schema.py
Move schema loading/validating code out of config
2020-03-02 15:55:29 -05:00
test_configuration_decode.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_containerized_jobs.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_data_manager.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_datatype_upload.py
Test clean up per code review feedback.
2020-04-21 12:58:44 -04:00
test_default_permissions.py
Test cases and fix for config option new_user_dataset_access_role_default_private.
2020-12-01 09:05:57 -05:00
test_extended_metadata_mapping.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_extended_metadata_outputs_to_working_directory.py
Run extended_metadata integration tests with outputs_to_working_directory as well
2019-11-14 12:20:48 +01:00
test_extended_metadata.py
add test tool to integration tests
2020-09-09 10:35:14 +02:00
test_fail_job_tool_unavailable.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_handler_assignment_methods.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_history_import_export.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_interactivetools_api.py
Add testcase and move stop operation into API
2020-12-12 11:26:09 +01:00
test_job_environments.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_job_outputs_to_working_directory.py
Update test class docstring
2021-01-07 17:53:29 +01:00
test_job_recovery.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_job_resubmission.py
fix mutable arguments in tests
2021-01-02 18:48:31 +00:00
test_kubernetes_runner.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_kubernetes_staging.py
Do not use unsecure yaml.load()
2020-11-18 16:16:46 +00:00
test_local_job_cancellation.py
Fix remaining issues reported by bugbear; add it to flake8 reqs
2021-01-16 05:58:15 +00:00
test_mules_as_job_handlers.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
test_page_revision_json_encoding.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_pulsar_embedded_containers.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_pulsar_embedded_copy_working.py
test a tool with from_working_dir and pulsar
2019-12-13 22:58:32 +01:00
test_pulsar_embedded_metadata.py
Extend pulsar metadata testing to cover MetadataFile inputs
2020-07-09 12:11:21 +02:00
test_pulsar_embedded_mq.py
Integration test for embedded Pulsar in MQ mode.
2020-03-24 10:34:30 -04:00
test_pulsar_embedded.py
Move galaxy testing utilities into more sane package structure.
2019-11-12 09:03:06 -05:00
test_quota.py
API test case for quota.
2020-10-20 11:12:18 -04:00
test_remote_files_histories.py
Allow history export to galaxy.files plugins.
2020-12-26 08:36:48 -05:00
test_remote_files.py
Allow history imports from galaxy.files plugins.
2020-12-25 20:04:55 -05:00
test_repository_operations.py
mypy for test/
2020-12-25 17:38:51 -05:00
test_resolvers.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
test_scripts.py
Cleanout communication server.
2020-10-22 09:58:34 -04:00
test_shed_tool_tests.py
Need to call configure_shed for persistent shed_tool_conf
2020-05-31 19:25:42 +02:00
test_tool_data_delete.py
Move test_delete_entry to integration tests
2021-01-20 13:21:57 +01:00
test_upload_configuration_options.py
Fix all E203, E741 and W504 flake8 errors
2021-01-18 10:35:41 +00:00
test_web_framework_config.py
FastAPI/ASGI CORS handling.
2021-01-27 19:55:48 -05:00
test_webdav.py
More comments for rapid testing optional galaxy.files stuff.
2020-10-22 09:30:50 -04:00
test_work_queue_put_failure.py
Replace usage of mkstemp with NamedTemporaryFile
2020-12-07 22:31:53 +01:00
test_workflow_handler_configuration.py
Fix remaining issues reported by bugbear; add it to flake8 reqs
2021-01-16 05:58:15 +00:00
test_workflow_refactoring.py
Establish a best practice for trans type annotations.
2021-01-12 20:22:54 -05:00
test_workflow_scheduling_options.py
Merge branch 'release_20.09' into dev
2020-10-24 16:21:52 +02:00
test_workflow_sync.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
tool_sheds_conf.xml
py3: fix installing and running data managers
2018-08-14 14:56:06 +02:00
uses_shed.py
Drop support for retired Python 3.5
2020-10-07 11:52:13 +01:00
workflow_handler_configuration_job_conf.xml
[17.01] Restrict workflow scheduling within a history to a fixed, random handler.
2017-03-29 22:20:41 -04:00