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mvdbeek
c0dbace7bb
This specifically addresses the problem where some jobs of a mapped-over collection have failed. Instead of filtering the failed collection and restarting the workflow at this position (involving a lot of copy-paste ...) the user can now limit the rerun to the problematic jobs and the workflow should resume from there. Should fix https://github.com/galaxyproject/galaxy/issues/2235. This is one possible implementation, it would also be feasible to not manipulate the original collection, but to copy the HDCA and then to replace collection elements and replace all references for jobs that depend on the HDCA, as we do for HDAs. This implementation seems simpler, but let me know if you see problems with this approach.
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The latest information about Galaxy is available via `https://galaxyproject.org/ <https://galaxyproject.org/>`__
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Galaxy Quickstart
=================
Galaxy requires Python 2.7 To check your python version, run:
.. code:: console
$ python -V
Python 2.7.3
Start Galaxy:
.. code:: console
$ sh run.sh
Once Galaxy completes startup, you should be able to view Galaxy in your
browser at:
http://localhost:8080
Configuration & Tools
=====================
You may wish to make changes from the default configuration. This can be
done in the ``config/galaxy.ini`` file.
Tools can be either installed from the Tool Shed or added manually.
For details please see the `tutorial <https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/>`__.
Note that not all dependencies for the tools provided in the
``tool_conf.xml.sample`` are included. To install them please visit
"Manage dependencies" in the admin interface.
Issues and Galaxy Development
=============================
Please see `CONTRIBUTING.md <CONTRIBUTING.md>`_ .
Roadmap
=============================
Interested in the next steps for Galaxy? Take a look at the `roadmap <https://github.com/galaxyproject/galaxy/issues/1928>`__.