galaxy

exports

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library

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rules

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users

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1.axt

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1.bam

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1.bed

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1.bed.spaces

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1.bedgraph

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1.bigbed

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1.bigwig

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1.csv

WIP: metadata validation.

2023-06-06 10:02:29 +02:00

1.ct

Add connectivity table test dataset

2022-11-18 18:24:54 -05:00

1.customtrack

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1.fasta

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1.fasta.gz

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1.fastq

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1.fastqsanger

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1.fastqsanger.bz2

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1.fastqsanger.gz

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1.fastqsolexa

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1.interval

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1.lav

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1.pileup

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1.RData

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1.sam

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1.sam.gz

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1.scf

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1.sff

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1.tabular

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1.tiff

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1.txt

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1.wig

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1.yaml

added sniffer for yaml

2021-09-20 13:07:20 -07:00

2.bed

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2.cram

Update pysam depedency to 0.20.0

2023-01-01 03:37:53 +00:00

2.fasta

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2.tabular

make 2nd column of 2.tabular test data unique values

2021-01-12 13:44:58 +01:00

2gen.fastq

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3.bam

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3.bed

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3.maf

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3unsorted.bam

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4.bed

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4.bed.bz2

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4.bed.gz

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4.bed.zip

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5_Ig-like.gff

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5.bed

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5.gff

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5.gff3

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6.bed

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7.bed

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8.bed

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9.bed

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11.tabular

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454Score.pdf

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454Score.png

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a.tab

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a.txt

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asian_chars_1.txt

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bad.html.gz

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bam_from_sam.bam

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bam_native_from_sam.bam

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bcf_index_metadata_test.bcf

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bcf_index_metadata_test.txt

Fix `metadata_bcf` framework test

2021-03-11 20:21:00 +00:00

biom1_metadata_test.txt

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cat_wrapper_out1.bed

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chebi_57262.v3k.mol

move test data for molecules converters

2021-06-29 14:06:39 +02:00

chopper.h5

Add support for visualizing HDF5 datasets. This contribution is split into two parts: the visualization plugin and backend changes. The client code integrates the h5web visualizer into Galaxy (https://h5web.panosc.eu ). The backend changes add the ability to access the contents of a dataset without needing to read the whole dataset, which is essential for large files. It is based on the h5grove API (https://github.com/silx-kit/h5grove ).

2023-05-04 20:48:15 -04:00

composite_output_expected_log

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drugbank_drugs.cml

move test data for molecules converters

2021-06-29 14:06:39 +02:00

drugbank_drugs.inchi

move test data for molecules converters

2021-06-29 14:06:39 +02:00

drugbank_drugs.mol

fix the to_inchi converter

2021-07-01 15:08:49 +02:00

drugbank_drugs.mol2

move test data for molecules converters

2021-06-29 14:06:39 +02:00

drugbank_drugs.sdf

move test data for molecules converters

2021-06-29 14:06:39 +02:00

drugbank_drugs.smi

move test data for molecules converters

2021-06-29 14:06:39 +02:00

empty.txt

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example-bag.zip

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filter1_in3.sam

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filter1_in5.tab

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filter1_in6.bed

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filter1_inbad.bed

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filter1_test1.bed

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filter1_test2.bed

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filter1_test3.sam

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filter1_test4.bed

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filter1_test5.tab

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filter1_test6.bed

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filter_labels_1.txt

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GRCm38mm10_chr5_34761740-34912521.fa

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html_file.txt

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im1_uint8.png

Add functional test for image_diff

2024-02-27 19:22:33 +01:00

im1_uint8.tif

Add functional test for image_diff

2024-02-27 19:22:33 +01:00

im2_a.png

Add functional test for image_diff

2024-02-27 19:22:33 +01:00

im2_b.png

Add functional test for image_diff

2024-02-27 19:22:33 +01:00

im3_a.png

Fix bugs

2024-02-27 21:54:23 +01:00

im3_b.tif

Fix bugs

2024-02-27 21:54:23 +01:00

im4_float.tif

Add float TIFF test case (fails with Pillow)

2024-03-19 22:03:34 +01:00

input_taxonomy.biom1

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joiner_header_in1.tab

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joiner_header_in2.tab

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joiner_out1.bed

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joiner_out2.bed

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joiner_out3.bed

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joiner_out4.bed

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joiner_out5.tab

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joiner_out6.tab

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joiner_out7.tab

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matrix.cool

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MTBLS6.zip

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neostore.zip

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new_element_sort_order.txt

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new_labels_1.txt

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new_labels_2.txt

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new_labels_bad_1.txt

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new_labels_bad_2.txt

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new_tags_1.txt

add a bit of docs to the add tags tool

2021-04-21 11:45:07 +02:00

phiX.fasta

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qname_sorted.bam

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qualscores.qual454

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qualscores.qualsolid

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random-file

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rgenetics.bed

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rgenetics.bim

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rgenetics.fam

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rgenetics.map

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rgenetics.ped

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safe_relative_symlink.tar

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safetar_with_symlink.tar

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sam_with_header.sam

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selenium-test-notebook.ipynb

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shrimp_cs_test1.csfasta

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simple_line_alternative.txt

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simple_line_no_newline.txt

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simple_line_x2_windows.txt

Display dataset source transform information.

2021-11-12 11:42:21 -05:00

simple_line_x2.txt

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simple_line_x3.txt

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simple_line_x5.txt

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simple_line.txt

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simple_lines_both.txt

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simple_lines_interleaved.txt

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simple.xml

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sort_out1.bed

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sort_out2.bed

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sort_out3.tab

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sort_out4.sam

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test.vcf

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test.vcf.gz

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testdir1.tar

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testdir1.tar.gz

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testdir1.zip

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testdir.tar

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tinywga.bed

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tinywga.bim

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tinywga.fam

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tinywga.map

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tinywga.ped

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tinywga.ped.space_to_tab

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unsafe_relative_symlink.tar

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unsafe.tar

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unsafe.zip

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