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Dannon Baker
bec6b06813
test_mcp_run_user_tool was building its history and input dataset with the default test interactor, while the MCP-side run authenticated as a freshly-provisioned UDT user -- so the MCP call was reaching for resources owned by a different user. Switch to DatasetPopulator(self._get_interactor(api_key=api_key)) so populator- side and MCP-side calls share an identity. Also assert on the run-tool response shape (jobs[].tool_id, outputs[].output_name) in addition to the end-to-end content check. test_mcp_delete_user_tool now also tries to run the UDT after deletion and asserts the call errors with "deactivated" -- regression test for the deactivation guard in run_user_tool.
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Galaxy Quickstart
=================
Galaxy requires Python 3.10 or higher. To check your Python version, run:
.. code:: console
$ python -V
Python 3.10.12
Start Galaxy:
.. code:: console
$ sh run.sh
Once Galaxy completes startup, you should be able to view Galaxy in your
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For more installation details please see: https://getgalaxy.org/
Documentation is available at: https://docs.galaxyproject.org/
Tutorials on how to use Galaxy, perform scientific analyses with it, develop Galaxy and its tools, and admin a Galaxy server are at: https://training.galaxyproject.org/
Tools
=====
Tools can be either installed from the Tool Shed or added manually.
For details please see the `tutorial <https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/>`__.
Note that not all dependencies for the tools provided in the
``tool_conf.xml.sample`` are included. To install them please visit
"Manage dependencies" in the admin interface.
Issues and Galaxy Development
=============================
Please see `CONTRIBUTING.md <CONTRIBUTING.md>`_ .