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74 lines
2.7 KiB
XML
74 lines
2.7 KiB
XML
<tool id="EMBOSS: infoseq46" name="infoseq">
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<description>Displays some simple information about sequences</description>
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<command>infoseq -sequence $input1 -outfile $out_file1 -html $html_out1 -heading $heading -usa $usa -name $disname -accession $accession -gi $gi -version $version -type $type -length $length -pgc
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$pgc -description $description -auto</command>
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<inputs>
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<param format="data" name="input1" type="data">
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<label>Sequences</label>
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</param>
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<param name="html_out1" type="select">
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<label>Format output as an HTML table</label>
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<option value="no">No</option>
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<option value="yes">Yes</option>
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</param>
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<param name="heading" type="select">
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<label>Display column headings</label>
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<option value="yes">Yes</option>
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<option value="no">No</option>
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</param>
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<param name="usa" type="select">
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<label>Display the USA of the sequence</label>
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<option value="yes">Yes</option>
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<option value="no">No</option>
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</param>
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<param name="disname" type="select">
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<label>Display 'name' column</label>
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<option value="yes">Yes</option>
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<option value="no">No</option>
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</param>
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<param name="accession" type="select">
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<label>Display 'accession' column</label>
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<option value="yes">Yes</option>
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<option value="no">No</option>
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</param>
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<param name="gi" type="select">
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<label>Display 'GI' column</label>
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<option value="no">No</option>
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<option value="yes">Yes</option>
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</param>
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<param name="version" type="select">
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<label>Display 'version' column</label>
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<option value="no">No</option>
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<option value="yes">Yes</option>
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</param>
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<param name="type" type="select">
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<label>Display 'type' column</label>
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<option value="yes">Yes</option>
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<option value="no">No</option>
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</param>
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<param name="length" type="select">
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<label>Display 'length' column</label>
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<option value="yes">Yes</option>
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<option value="no">No</option>
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</param>
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<param name="pgc" type="select">
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<label>Display 'percent GC content' column</label>
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<option value="yes">Yes</option>
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<option value="no">No</option>
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</param>
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<param name="description" type="select">
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<label>Display 'description' column</label>
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<option value="yes">Yes</option>
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<option value="no">No</option>
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</param>
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</inputs>
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<outputs>
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<data format="txt" name="out_file1" />
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</outputs>
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<code file="emboss_format_corrector.py" />
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<help>
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You can view the original documentation here_.
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.. _here: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/infoseq.html
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</help>
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</tool> |