Greg Von Kuster 05df900b3d Metadata will now be set on all output datasets when getting encode data.

2008-01-03 14:12:07 +00:00

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data_source

Metadata will now be set on all output datasets when getting encode data.

2008-01-03 14:12:07 +00:00

emboss

Changing all tools that use 'text' as file extension to now use 'txt'. We are eliminating the use of 'text' as a file extension within Galaxy and will now use only 'txt' for Text data types.

2007-09-27 12:24:27 +00:00

emboss_5

Committing EMBOSS v5.0 tools tcode textsearch tmap twofeat vectorstrip wordmatch with associated functional test files

2007-12-17 14:38:16 +00:00

encode

Fixes for random intervals tool.

2008-01-02 21:40:59 +00:00

extract

More dynamic options cleanup. Eliminated the "tool_type" attribute, among other cleanup chores.

2007-11-30 20:08:21 +00:00

filters

More MAF tools now have better behavior when no species are selected.

2007-11-29 18:13:48 +00:00

hyphy

Adding HYPHY tool to compute dN/dS ratio.

2007-07-11 20:05:20 +00:00

new_operations

A better way to decompress UCSC gzipped files. Added functional tests for uploading binary, zipped and gzipped files. Added temp file removal to upload when exception thrown. Eliminated an unnecessary import in subtract_query.

2007-12-20 18:49:03 +00:00

patmat

Changing all tools that use 'text' as file extension to now use 'txt'. We are eliminating the use of 'text' as a file extension within Galaxy and will now use only 'txt' for Text data types.

2007-09-27 12:24:27 +00:00

plotting

Bug fix in histogram tool.

2007-12-11 21:41:31 +00:00

regVariation

Uncommented functional tests in some regVariation tools in preparation for moving them to main.

2007-11-30 13:43:59 +00:00

stats

Better way to skip invalid comment lines in filtering tool. Better numerical value checks in interval.py.

2007-12-18 14:52:04 +00:00

validation

Cleanup: removing the cookbook package. Bunch and odict move to galaxy.util, tools

2007-07-31 15:45:59 +00:00

visualization

Eliminated Dataset.state.FAKE (requires db update), replacing it with Dataset.state.OK since fake datasets are removed, causing problems for workflow.

2007-12-21 19:31:58 +00:00