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27 lines
766 B
XML
27 lines
766 B
XML
<tool id="EMBOSS: cai_custom6" name="cai custom">
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<description>CAI codon adaptation index using custom codon usage file</description>
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<command>cai -seqall $input1 -outfile $out_file1 -cfile $input2 -auto</command>
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<inputs>
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<param format="fasta" name="input1" type="data">
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<label>On query</label>
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</param>
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<param format="txt" name="input2" type="data">
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<label>Codon Usage File</label>
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</param>
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</inputs>
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<outputs>
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<data format="txt" name="out_file1" />
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</outputs>
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<help>
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.. class:: warningmark
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The input dataset needs to be sequences.
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-----
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You can view the original documentation here_.
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.. _here: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/cai_custom.html
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</help>
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</tool>
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