Daniel Blankenberg 48548341fc Handle non-ascii unicode in upload tool. Significant pre-existing refactoring still needed.

2012-08-28 19:23:39 -04:00

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annotation_profiler

Add information for UCSC data to annotation profiler.

2011-11-16 10:40:55 -05:00

data_destination

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data_source

Handle non-ascii unicode in upload tool. Significant pre-existing refactoring still needed.

2012-08-28 19:23:39 -04:00

discreteWavelet

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

encode

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evolution

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

extract

Clean up temp files.

2012-03-09 16:11:21 -05:00

fasta_tools

Enable fasta_to_len conversion to use only first word in title; this is standards compliant and used by default for automatic conversion.

2012-03-08 11:09:14 -05:00

fastq

Update FASTQ Groomer tool help to indicate that Illumina 1.8+ is Sanger encoded.

2011-11-08 16:53:19 -05:00

fastx_toolkit

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

filters

Add feature/attribute name indexing framework to converters. Provide full text indexing for GFF attributes.

2012-08-16 16:32:00 -04:00

gatk

Add argument names to parameter help for GATK tools' options.

2012-04-10 16:22:45 -04:00

genetrack

Update GeneTrack help.

2011-11-10 11:54:50 -05:00

genomespace

Update GenomeSpace exporter tool to use the newly introduced /personaldirectory as the root for auto-generated export paths.

2012-05-04 14:31:22 -04:00

hyphy

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indels

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maf

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

meme

Specify meme requirement for fimo tool.

2012-02-02 21:29:30 -06:00

metag_tools

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

multivariate_stats

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mutation

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

new_operations

fix to mako import and some up-stack error reporting in tools

2012-08-08 12:30:25 -04:00

next_gen_conversion

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ngs_rna

Include fusions output in Tophat2 wrapper.

2012-08-14 12:17:01 -04:00

ngs_simulation

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

peak_calling

Tool help updates.

2011-11-14 13:26:29 -05:00

phenotype_association

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

picard

Reverted picard_FastqToSam.xml which I accidentally embellished with a bogus --tmpdir flag because it does not use picard_wrapper.py

2012-04-05 02:16:12 +10:00

plotting

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

regVariation

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

rgenetics

More JS file reorganization: (a) move IE and rgenetics into their own directories; (b) move additional external libraries to libs.

2012-08-21 16:54:19 -04:00

samtools

Require pileup format as input to pileup parser tool.

2012-08-23 15:58:11 -04:00

solid_tools

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

sr_assembly

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sr_mapping

Output sorted BAM from Bowtie2.

2012-08-22 16:49:12 -04:00

stats

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

taxonomy

Use mako template in tool help so that dynamic image paths can be used. Fixes #141

2012-08-07 09:40:51 -04:00

validation

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vcf_tools

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visualization

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