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Update FASTQ Groomer tool help to indicate that Illumina 1.8+ is Sanger encoded.

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This commit is contained in:
Daniel Blankenberg
2011-11-08 16:53:19 -05:00
parent edf615b359
commit 46ece42f6e
1 changed files with 5 additions and 1 deletions
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tools/fastq/fastq_groomer.xml
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@@ -16,7 +16,7 @@
<param name="input_file" type="data" format="fastq" label="File to groom" />
<param name="input_type" type="select" label="Input FASTQ quality scores type">
<option value="solexa">Solexa</option>
<option value="illumina">Illumina 1.3+</option>
<option value="illumina">Illumina 1.3-1.7</option>
<option value="sanger" selected="True">Sanger</option>
<option value="cssanger">Color Space Sanger</option>
</param>
@@ -358,6 +358,10 @@ When converting between color space (csSanger) and base/sequence space (Sanger,
Diagram adapted from http://en.wikipedia.org/wiki/FASTQ_format
.. class:: infomark
Output from Illumina 1.8+ pipelines are Sanger encoded.
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**Citation**