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mvdbeek
ba1a3b9f69
AgentTools.get_tool_categories iterates toolbox.tools() and reads tool.get_panel_section()[1] on every visible tool. get_panel_section was not on the LazyTool stub surface, so under the permissive default that sweep materialised the entire toolbox to build the category list (and under LAZY_TOOL_STRICT=1 it would now raise). The populator already stamps panel_section_id / panel_section_name onto ToolIndexEntry, so forward the call off the entry — matching the (section_id, section_name) / (None, None) contract of Tool.get_panel_section — and keep the walk lazy. Claude-Session: https://claude.ai/code/session_018L7ZmCv2ubKA3JNeSL8Pkr
.. figure:: https://galaxyproject.org/images/galaxy-logos/galaxy_project_logo.jpg
:alt: Galaxy Logo
The latest information about Galaxy can be found on the `Galaxy Community Hub <https://galaxyproject.org/>`__.
Community support is available at `Galaxy Help <https://help.galaxyproject.org/>`__.
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:alt: Chat on irc
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:alt: Release Documentation
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:target: https://travis-ci.org/galaxyproject/galaxy
:alt: Inspect the test results
Galaxy Quickstart
=================
Galaxy requires Python 3.10 or higher. To check your Python version, run:
.. code:: console
$ python -V
Python 3.10.12
Start Galaxy:
.. code:: console
$ sh run.sh
Once Galaxy completes startup, you should be able to view Galaxy in your
browser at: http://localhost:8080
For more installation details please see: https://getgalaxy.org/
Documentation is available at: https://docs.galaxyproject.org/
Tutorials on how to use Galaxy, perform scientific analyses with it, develop Galaxy and its tools, and admin a Galaxy server are at: https://training.galaxyproject.org/
Tools
=====
Tools can be either installed from the Tool Shed or added manually.
For details please see the `tutorial <https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/>`__.
Note that not all dependencies for the tools provided in the
``tool_conf.xml.sample`` are included. To install them please visit
"Manage dependencies" in the admin interface.
Issues and Galaxy Development
=============================
Please see `CONTRIBUTING.md <CONTRIBUTING.md>`_ .