Guruprasad Anada 13b80b8e21 Modifications to Feature Coverage tool: Output format changed and test-data updated.

2008-01-25 22:19:57 +00:00

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galaxyops

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

coverage.py

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

featureCounter_code.py

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

featureCounter_LIST.py

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

featureCounter_OLD2.py

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

featureCounter_OLD.py

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

featureCounter.py

Modifications to Feature Coverage tool: Output format changed and test-data updated.

2008-01-25 22:19:57 +00:00

featureCounter.xml

Modifications to Feature Coverage tool: Output format changed and test-data updated.

2008-01-25 22:19:57 +00:00

getIndels_2way.xml

Uncommented functional tests in some regVariation tools in preparation for moving them to main.

2007-11-30 13:43:59 +00:00

getIndels_3way.xml

Adding tool "Get Indel rates for 3-way alignments" under Regional variation section.

2007-11-28 18:56:13 +00:00

getIndels_good_11_19.py

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

getIndels_old.py

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

getIndels.py

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

maf_cpg_filter.py

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

maf_cpg_filter.xml

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

maf_index_entry.py

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

parseMAF_smallIndels.pl

Adding tool "Get Indel rates for 3-way alignments" under Regional variation section.

2007-11-28 18:56:13 +00:00

qa_scores_by_chr.py

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

quality_filter.py

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

quality_filter.xml

Uncommented functional tests in some regVariation tools in preparation for moving them to main.

2007-11-30 13:43:59 +00:00

qv_to_bqv.py

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

qv_to_bqv.xml

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

windowSplitter.py

Regional variation tools: Tool xmls, code files and test-data added for 4 regional variation tools.

2007-11-19 21:55:45 +00:00

windowSplitter.xml

Modified all tools to use the new <options> tag for dynamic select lists. Completely eliminated the <select_options> tag approach. With the exception of find_clusters_mysql, the old dynamic_options approach is not being used by any tool, although dynamic_options is still supported in parameters.py.

2007-11-29 17:04:42 +00:00