galaxy

biotools

Move things around

2022-11-16 17:01:28 +01:00

data

Relativize bundle paths from the known job output root

2026-07-17 12:07:15 +02:00

mulled

Reuse mulled Quay lookup for cache seeds

2026-07-19 13:31:58 +02:00

test_data/test_job_fixtures

Add strict Pydantic Job model for TestJob.job

2026-04-22 09:53:59 -04:00

tool_directories/r-tool-dir

…

toolbox

toolbox filters: document the filter surface as a ToolFilterContext protocol

2026-07-03 11:28:20 +02:00

upgrade

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

verify

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

__init__.py

…

doi_prefixed_citation.xml

Relax legacy doi:-prefixed citation handling (#22795 )

2026-06-01 14:59:48 +02:00

framework_tool_checks.yml

Tool Request models.

2024-09-30 13:25:02 -04:00

invalid_citation_26.1.xml

Relax legacy doi:-prefixed citation handling (#22795 )

2026-06-01 14:59:48 +02:00

invalid_citation.xml

Fix #19515 - invalid citation handling changed with 24.2.

2025-03-20 10:39:31 -04:00

parameter_specification.yml

Tighten RulesModel: typed discriminated-union rules, constrained mappings, regex validation

2026-07-20 15:28:25 -04:00

test_assertion_models.py

Apply 2026 black style

2026-01-20 10:25:45 +00:00

test_conda_resolution.py

Apply 2026 black style

2026-01-20 10:25:45 +00:00

test_container_description.py

container description: make identifier non-optional

2023-06-14 15:28:37 +01:00

test_container_resolution.py

Reuse mulled Quay lookup for cache seeds

2026-07-19 13:31:58 +02:00

test_container_shape_lint.py

Move UserToolSource container-shape check to a lint rule

2026-05-21 14:35:28 +02:00

test_credential_parsing.py

Simplify test_credential_parsing to use FunctionalTestToolTestCase

2026-03-18 12:03:33 +01:00

test_cwl_util.py

Merge branch 'release_26.0' into release_26.1

2026-07-26 11:04:51 +02:00

test_cwl.py

Refactor requirement parsing in multiple files to streamline credential handling

2025-10-07 16:06:04 +02:00

test_docker_volumes.py

Drop containers package, move to tool_util

2022-03-24 19:51:59 +01:00

test_edam_util.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_format.py

Add galaxy-tool-format CLI entry point

2026-02-23 15:22:14 -05:00

test_hash_function_names_sync.py

Add strict Pydantic Job model for TestJob.job

2026-04-22 09:53:59 -04:00

test_input_models.py

Fix unit test import

2025-05-12 12:29:43 +02:00

test_loader_directory.py

Apply 2026 black style

2026-01-20 10:25:45 +00:00

test_mulled_cache.py

Reuse mulled Quay lookup for cache seeds

2026-07-19 13:31:58 +02:00

test_ontologies.py

Settle on type instead of reftyp inside xref

2025-05-05 19:07:27 +02:00

test_output_checker.py

fix test exit code default

2024-03-01 22:45:39 -05:00

test_output_models.py

New packages galaxy-tool-util-models, galaxy-tool-shed-schema.

2025-04-16 12:47:37 +02:00

test_parameter_convert.py

Treat empty-string default on optional color as unset

2026-07-22 08:09:03 +03:00

test_parameter_cwl_runtime_model.py

Add runtime model to API

2025-05-12 10:54:30 +02:00

test_parameter_specification_json_schema.py

Tighten RulesModel: typed discriminated-union rules, constrained mappings, regex validation

2026-07-20 15:28:25 -04:00

test_parameter_specification.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_parameter_test_cases.py

Test numeric empty-string test values coerce to None

2026-07-22 08:40:07 +03:00

test_parameter_validator_models.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_parsed_tool_model.py

Keep ParsedTool tests within tool util

2026-05-06 09:02:18 -04:00

test_parsing.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_required_files.py

Replace `unittest.TestCase` with pytest-based partial re-implementation

2022-09-27 03:34:58 +01:00

test_resolution_cache.py

Add reusable mulled cache seed generator

2026-07-19 11:59:35 +02:00

test_runtime.py

Fail fast on unknown collection_type instead of silent fallbacks.

2026-02-12 15:58:17 -05:00

test_singularity_util.py

fix tests for singularity

2025-05-09 09:27:53 +02:00

test_test_definition_parsing.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_test_format_model.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_test_parsing.py

Apply 2026 black style

2026-01-20 10:25:45 +00:00

test_tool_deps.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_tool_linters.py

Fix ISC004 errors reported by ruff 0.16.0

2026-07-25 17:36:10 +01:00

test_tool_loader.py

Prefix XPath expressions with './' in tool loader tests

2026-04-14 15:50:27 +02:00

test_toolbox_view_parsing.py

…

test_toolbox_view_sources.py

Apply 2026 black style

2026-01-20 10:25:45 +00:00

test_user_tool_source_fixtures.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_user_tool_source_validation.py

Merge branch 'release_26.1' into dev

2026-07-14 19:13:50 +02:00

test_util.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_verify_function.py

Initial unit test for copying test data.

2022-09-23 09:11:40 -04:00

test_verify_hid.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00

test_verify_script.py

Remove use of mktemp

2023-06-12 09:48:38 -04:00

test_verify.py

Merge branch 'release_26.1' into dev

2026-07-18 11:53:54 +02:00

test_version.py

Vendorise `packaging.versions.LegacyVersion`

2023-05-07 17:30:59 +01:00

test_wait.py

…

test_yaml_parameters.py

Add container resolution and authoring safeguards to the custom tool agent

2026-07-07 16:39:17 +02:00

user_tool_source_validation_cases.yml

Make discover_datasets reject under-specified descriptors

2026-06-19 10:21:02 +02:00

util.py

Drop support for Python 3.8

2026-06-25 15:12:05 +01:00