Daniel Blankenberg 60d477cea5 Have GOPs Concatenate tool always respect the provided strand column.

2012-01-18 10:30:08 -05:00

..

basecoverage.xml

Updated "Example" images shown at the bottom of many

2011-12-19 02:44:31 -08:00

cluster.xml

Updated "Example" images shown at the bottom of many

2011-12-19 02:44:31 -08:00

column_join.py

Fixed another bug in column join so it will handle filling empty columns properly

2010-08-20 17:04:16 -04:00

column_join.xml

Updated column join to handle situation when last column is a join column and a row is missing that column

2010-08-20 14:40:39 -04:00

complement.xml

Update links to reflect Galaxy Wiki moving away from Bitbucket.

2011-07-18 18:10:55 -05:00

concat.xml

Have GOPs Concatenate tool always respect the provided strand column.

2012-01-18 10:30:08 -05:00

coverage.xml

Update links to reflect Galaxy Wiki moving away from Bitbucket.

2011-07-18 18:10:55 -05:00

flanking_features.py

Fixed a bug in fetch closest features - adjacent upstream feature will now be reported in the output.

2010-12-03 15:07:49 -05:00

flanking_features.xml

Fixed a bug in fetch closest features - adjacent upstream feature will now be reported in the output.

2010-12-03 15:07:49 -05:00

get_flanks.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

get_flanks.xml

Adjust image links in tools to work with a proxy prefix [Brad Chapman]. Fixes #141

2010-12-14 14:22:13 -05:00

gops_basecoverage.py

Modified strand column assignment to the NiceReaderWrapper object in basecoverage tool. Previously, if the input had no strand column declared, the object would have a default strand col of 5, and return a coverage of 0 as c5 might not have been a valid strand col.

2010-02-10 14:14:55 -05:00

gops_cluster.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_complement.py

Move ucsc and gbrowse data from static to tool-data/shared.

2008-06-03 18:53:26 +00:00

gops_concat.py

Have GOPs Concatenate tool always respect the provided strand column.

2012-01-18 10:30:08 -05:00

gops_coverage.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_intersect.py

Make gops subtract tool compatible with GFF features rather than lines.

2011-05-03 11:35:21 -04:00

gops_join.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_merge.py

Corrected the way we handle exceptions in the gops tools when building / using bitsets dictionaries. Added several new functional tests.

2008-05-23 20:43:20 +00:00

gops_subtract.py

Make gops subtract tool compatible with GFF features rather than lines.

2011-05-03 11:35:21 -04:00

intersect.xml

Updated "Example" images shown at the bottom of many

2011-12-19 02:44:31 -08:00

join.xml

Updated "Example" images shown at the bottom of many

2011-12-19 02:44:31 -08:00

merge.xml

Update links to reflect Galaxy Wiki moving away from Bitbucket.

2011-07-18 18:10:55 -05:00

operation_filter.py

Improvements to GOPS subtract: (a) preserve metadata for interval inputs; (b) allow arbitrary mix of interval and GFF inputs; and (c) functional tests updated to test new functionality.

2010-06-23 10:43:17 -04:00

subtract_query.py

Deprecated code corrections for supporting Python 2.6. Many of the Python 2.6 eggs are still throwing DeprecationWarning messages, so some things still won't work. Eggs for 2.6 need to be re-scrambled after corrections are made.

2009-08-14 15:37:31 -04:00

subtract_query.xml

First pass standardizing to 'dataaset' from 'query'.

2011-01-27 13:46:20 -05:00

subtract.xml

Updated "Example" images shown at the bottom of many

2011-12-19 02:44:31 -08:00

tables_arithmetic_operations.pl

Adding new regional variation tools developed by Zaky from Makova lab.

2010-04-27 15:36:55 -04:00

tables_arithmetic_operations.xml

Adding new regional variation tools developed by Zaky from Makova lab.

2010-04-27 15:36:55 -04:00