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30 lines
1.5 KiB
XML
30 lines
1.5 KiB
XML
<tool id="EMBOSS: plotcon75" name="plotcon" version="5.0.0">
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<!-- produces png file -->
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<description>Plot quality of conservation of a sequence alignment</description>
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<requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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<command interpreter="perl">emboss_single_outputfile_wrapper.pl plotcon -sequences '$input1' -graph png -goutfile '$out_file1' -winsize '$winsize' -auto</command>
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<inputs>
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<param format="data" name="input1" type="data">
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<label>Sequence</label>
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</param>
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<param name="winsize" size="10" type="text" value="4">
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<label>Number of columns to average alignment quality over</label>
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</param>
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</inputs>
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<outputs>
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<data format="png" name="out_file1" />
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</outputs>
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<help>
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You can view the original documentation here_.
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.. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/plotcon.html
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------
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**Citation**
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For the underlying tool, please cite `Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000 Jun;16(6):276-7. <http://www.ncbi.nlm.nih.gov/pubmed/10827456>`_
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If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. <http://www.ncbi.nlm.nih.gov/pubmed/17568012>`_
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</help>
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</tool> |