mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-10-25 00:12:08 +08:00
mvdbeek
aa42391171
Fixes:
```
galaxy.web.framework.decorators ERROR 2020-02-07 11:58:02,554 Uncaught exception in exposed API method:
Traceback (most recent call last):
File "/Users/mvandenb/src/galaxy/lib/galaxy/web/framework/decorators.py", line 157, in decorator
rval = func(self, trans, *args, **kwargs)
File "/Users/mvandenb/src/galaxy/lib/galaxy/webapps/galaxy/api/datasets.py", line 139, in show
rval = self._data(trans, dataset, **kwd)
File "/Users/mvandenb/src/galaxy/lib/galaxy/webapps/galaxy/api/datasets.py", line 289, in _data
return indexer.get_data(chrom, low, high)
File "/Users/mvandenb/src/galaxy/lib/galaxy/visualization/data_providers/genome.py", line 1233, in get_data
result = summarize_region(bbi, chrom, start, end, num_points)
File "/Users/mvandenb/src/galaxy/lib/galaxy/visualization/data_providers/genome.py", line 1196, in summarize_region
for i in range(num_points):
TypeError: 'float' object cannot be interpreted as an integer
```
.. figure:: https://galaxyproject.org/images/galaxy-logos/galaxy_project_logo.jpg
:alt: Galaxy Logo
The latest information about Galaxy can be found on the `Galaxy Community Hub <https://galaxyproject.org/>`__.
Community support is available at `Galaxy Help <https://help.galaxyproject.org/>`__.
.. image:: https://img.shields.io/badge/chat-irc.freenode.net%23galaxyproject-blue.svg
:target: https://webchat.freenode.net/?channels=galaxyproject
:alt: Chat on irc
.. image:: https://img.shields.io/badge/chat-gitter-blue.svg
:target: https://gitter.im/galaxyproject/Lobby
:alt: Chat on gitter
.. image:: https://img.shields.io/badge/release-documentation-blue.svg
:target: https://docs.galaxyproject.org/en/master/
:alt: Release Documentation
.. image:: https://travis-ci.org/galaxyproject/galaxy.svg?branch=dev
:target: https://travis-ci.org/galaxyproject/galaxy
:alt: Inspect the test results
Galaxy Quickstart
=================
Galaxy requires Python 2.7 To check your python version, run:
.. code:: console
$ python -V
Python 2.7.3
Start Galaxy:
.. code:: console
$ sh run.sh
Once Galaxy completes startup, you should be able to view Galaxy in your
browser at:
http://localhost:8080
Configuration & Tools
=====================
You may wish to make changes from the default configuration. This can be
done in the ``config/galaxy.ini`` file.
Tools can be either installed from the Tool Shed or added manually.
For details please see the `tutorial <https://galaxyproject.org/admin/tools/add-tool-from-toolshed-tutorial/>`__.
Note that not all dependencies for the tools provided in the
``tool_conf.xml.sample`` are included. To install them please visit
"Manage dependencies" in the admin interface.
Issues and Galaxy Development
=============================
Please see `CONTRIBUTING.md <CONTRIBUTING.md>`_ .
Roadmap
=============================
Interested in the next steps for Galaxy? Take a look at the `roadmap <https://github.com/galaxyproject/galaxy/projects/8>`__.