Greg Von Kuster 927cfe685c Fixed my previous fix for copying history items to a library, which really didn't fix anything.  Fixed the functional tests for lav_to_bed, split_paired_reads, and solid2fastq by adding the 2nd output dataset to the test for each tool.  Renamed the test files for the tools to have the Galaxy supported file extension.

2010-01-14 09:44:58 -05:00

..

bwa_solid2fastq_modified.pl

Updated solid_to_fastq so that -1 qualities are converted to 1 before conversion to FASTQ.

2009-10-21 16:04:24 -04:00

fastq_conversions.py

Added solid_to_fastq and fastq_conversions converters to Convert Formats section

2009-07-31 11:48:37 -04:00

fastq_conversions.xml

Updated BWA wrapper tool: replaced threads option to hard-coded value, changed output and test file output datatype to sam, changed test file names to standard, better cleanup of temp files, added dbkey parameter and exec_before_job method to set it. Also changed name of a FASTQ Conversions tool test file

2009-09-16 11:14:39 -04:00

fastq_gen_conv.py

Changed FASTQ Groomer's handling of Sanger data to output all lines even if only first n are validated

2009-10-12 14:04:28 -04:00

fastq_gen_conv.xml

ngs updates

2009-10-07 11:18:14 -04:00

solid2fastq.py

Small fixes to solid2fastq

2010-01-06 11:56:55 -05:00

solid2fastq.xml

Fixed my previous fix for copying history items to a library, which really didn't fix anything.  Fixed the functional tests for lav_to_bed, split_paired_reads, and solid2fastq by adding the 2nd output dataset to the test for each tool.  Renamed the test files for the tools to have the Galaxy supported file extension.

2010-01-14 09:44:58 -05:00

solid_to_fastq.py

Updated solid_to_fastq so that -1 qualities are converted to 1 before conversion to FASTQ.

2009-10-21 16:04:24 -04:00

solid_to_fastq.xml

Updated solid_to_fastq so that -1 qualities are converted to 1 before conversion to FASTQ.

2009-10-21 16:04:24 -04:00