Greg Von Kuster 91c4fa32e8 Migrating gff2bed and bed2gff tools from perl to python - tool behavior remains exactly the same.

2008-01-15 19:57:11 +00:00

..

data_source

Added blurb to Get ENCODE Data tools telling user data may not be current.

2008-01-14 21:39:11 +00:00

emboss

Changing all tools that use 'text' as file extension to now use 'txt'. We are eliminating the use of 'text' as a file extension within Galaxy and will now use only 'txt' for Text data types.

2007-09-27 12:24:27 +00:00

emboss_5

Committing EMBOSS v5.0 tools tcode textsearch tmap twofeat vectorstrip wordmatch with associated functional test files

2007-12-17 14:38:16 +00:00

encode

New reports app server and 1st report showing disk usage for dataset file system - still need to mess with styles a bit.

2008-01-11 21:24:21 +00:00

extract

More dynamic options cleanup. Eliminated the "tool_type" attribute, among other cleanup chores.

2007-11-30 20:08:21 +00:00

filters

Migrating gff2bed and bed2gff tools from perl to python - tool behavior remains exactly the same.

2008-01-15 19:57:11 +00:00

hyphy

Adding HYPHY tool to compute dN/dS ratio.

2007-07-11 20:05:20 +00:00

metag_tools

add a section: metagenomics

2008-01-09 20:41:59 +00:00

new_operations

Reverting the test data for the gops_cluster tool to that which was originally used by Ian in rev 1636.

2008-01-07 13:02:10 +00:00

patmat

Changing all tools that use 'text' as file extension to now use 'txt'. We are eliminating the use of 'text' as a file extension within Galaxy and will now use only 'txt' for Text data types.

2007-09-27 12:24:27 +00:00

plotting

Bug fix in histogram tool.

2007-12-11 21:41:31 +00:00

regVariation

Uncommented functional tests in some regVariation tools in preparation for moving them to main.

2007-11-30 13:43:59 +00:00

stats

Better way to skip invalid comment lines in filtering tool. Better numerical value checks in interval.py.

2007-12-18 14:52:04 +00:00

validation

Cleanup: removing the cookbook package. Bunch and odict move to galaxy.util, tools

2007-07-31 15:45:59 +00:00

visualization

Eliminated Dataset.state.FAKE (requires db update), replacing it with Dataset.state.OK since fake datasets are removed, causing problems for workflow.

2007-12-21 19:31:58 +00:00