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34 lines
1.2 KiB
XML
34 lines
1.2 KiB
XML
<tool id="maf_limit_size1" name="Filter MAF blocks" version="1.0.1" profile="24.2">
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<description>by Size</description>
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<macros>
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<import>macros.xml</import>
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</macros>
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<expand macro="requirements" />
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<required_files>
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<include path="maf_limit_size.py"/>
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</required_files>
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<command>python '$__tool_directory__/maf_limit_size.py' '$input1' '$out_file1' '$min_size' '$max_size'</command>
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<inputs>
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<param format="maf" name="input1" label="MAF File" type="data"/>
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<param name="min_size" label="Minimum Size" value="0" type="integer"/>
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<param name="max_size" label="Maximum Size" value="0" type="integer" help="A maximum size less than 1 indicates no limit"/>
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</inputs>
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<outputs>
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<data format="maf" name="out_file1" />
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</outputs>
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<tests>
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<test>
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<param name="input1" value="3.maf" ftype="maf" />
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<param name="min_size" value="0"/>
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<param name="max_size" value="0"/>
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<output name="out_file1" file="maf_limit_size1_out.maf" />
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</test>
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</tests>
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<help>
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**What it does**
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This tool takes a MAF file and a size range and extracts the MAF blocks which fall within the specified range.
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</help>
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<expand macro="citations" />
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</tool>
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