mvdbeek 657b9f7f6c Add separate out file for MAF_Limit_To_Species1 test ...

The test file is shared with MAF_filter, so if you use the same file
only one of the tests can pass.

2025-09-26 12:47:24 +02:00

..

__init__.py

Check types of modules without type annotations in the their signatures on new modules.

2021-10-11 16:08:26 -04:00

genebed_maf_to_fasta.xml

Update maf tools with profiles, required_files, and requirements.

2025-09-25 18:13:26 +02:00

interval2maf_pairwise.xml

Update maf tools with profiles, required_files, and requirements.

2025-09-25 18:13:26 +02:00

interval2maf.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

interval2maf.xml

partially revert d674f2ba6e

2022-09-26 11:24:56 +02:00

interval_maf_to_merged_fasta.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

interval_maf_to_merged_fasta.xml

Update maf tools with profiles, required_files, and requirements.

2025-09-25 18:13:26 +02:00

macros.xml

Update maf tools with profiles, required_files, and requirements.

2025-09-25 18:13:26 +02:00

maf_by_block_number.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_by_block_number.xml

Update maf tools with profiles, required_files, and requirements.

2025-09-25 18:13:26 +02:00

maf_filter.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_filter.xml

Add separate out file for MAF_Limit_To_Species1 test

2025-09-26 12:47:24 +02:00

maf_limit_size.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_limit_size.xml

Update maf tools with profiles, required_files, and requirements.

2025-09-25 18:13:26 +02:00

maf_limit_to_species.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_limit_to_species.xml

Update maf tools with profiles, required_files, and requirements.

2025-09-25 18:13:26 +02:00

maf_reverse_complement.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_reverse_complement.xml

Update maf tools with profiles, required_files, and requirements.

2025-09-25 18:13:26 +02:00

maf_split_by_species.py

Fix remaining issues reported by bugbear; add it to flake8 reqs

2021-01-16 05:58:15 +00:00

maf_split_by_species.xml

Update maf tools with profiles, required_files, and requirements.

2025-09-25 18:13:26 +02:00

maf_stats.py

Rename variables to fix B020 (false positive) errors

2022-03-26 23:43:08 +00:00

maf_stats.xml

Update maf tools with profiles, required_files, and requirements.

2025-09-25 18:13:26 +02:00

maf_thread_for_species.py

Fix maf_thread_for_species.py

2023-11-03 08:35:06 +01:00

maf_thread_for_species.xml

Update maf tools with profiles, required_files, and requirements.

2025-09-25 18:13:26 +02:00

maf_to_bed_code.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

maf_to_bed.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_to_bed.xml

Update maf tools with profiles, required_files, and requirements.

2025-09-25 18:13:26 +02:00

maf_to_fasta_concat.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_to_fasta_multiple_sets.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_to_fasta.xml

Update maf tools with profiles, required_files, and requirements.

2025-09-25 18:13:26 +02:00

maf_to_interval.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_to_interval.xml

Update maf tools with profiles, required_files, and requirements.

2025-09-25 18:13:26 +02:00

vcf_to_maf_customtrack.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

vcf_to_maf_customtrack.xml

Bump version and add profile

2020-02-12 09:47:36 +01:00