Jeremy Goecks 72f6f87644 Require pileup format as input to pileup parser tool.

2012-08-23 15:58:11 -04:00

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bam_to_sam.py

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bam_to_sam.xml

Update help for some SAMTools.

2011-11-21 16:55:16 -05:00

pileup_interval.py

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pileup_interval.xml

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pileup_parser.pl

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pileup_parser.xml

Require pileup format as input to pileup parser tool.

2012-08-23 15:58:11 -04:00

sam2interval.py

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sam2interval.xml

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sam_bitwise_flag_filter.py

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sam_bitwise_flag_filter.xml

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sam_merge_code.py

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sam_merge.py

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sam_merge.xml

Merged sam_merge fixes from galaxy-central keeping change to set TMP_DIR

2011-12-22 11:13:07 -05:00

sam_pileup.py

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sam_pileup.xml

The upload tool requires samtools to upload BAM files, the Pileup tool requires samtools <= 0.1.16.

2011-12-06 11:42:12 -05:00

sam_to_bam.py

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sam_to_bam.xml

Update help for some SAMTools.

2011-11-21 16:55:16 -05:00

samtools_flagstat.xml

Update help for some SAMTools.

2011-11-21 16:55:16 -05:00

samtools_mpileup.xml

Fix inconsequential warning about when tag when loading samtools mpileup.

2012-04-10 16:07:19 -04:00

samtools_rmdup.xml

Update help for some SAMTools.

2011-11-21 16:55:16 -05:00

samtools_slice_bam.py

Add Slice BAM by regions tool.

2012-05-02 11:32:19 -04:00

samtools_slice_bam.xml

Fix typo in BAM slice tool.

2012-05-02 11:47:04 -04:00

samtools_wrapper.py

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