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The upload tool requires samtools to upload BAM files, the Pileup tool requires samtools <= 0.1.16.

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This commit is contained in:
Nate Coraor
2011-12-06 11:42:12 -05:00
parent 9943f9528e
commit 03c4fa3689
2 changed files with 4 additions and 1 deletions
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tools/data_source/upload.xml
+3
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@@ -5,6 +5,9 @@
from your computer
</description>
<action module="galaxy.tools.actions.upload" class="UploadToolAction"/>
<requirements>
<requirement type="package">samtools</requirement>
</requirements>
<command interpreter="python">
upload.py $GALAXY_ROOT_DIR $GALAXY_DATATYPES_CONF_FILE $paramfile
#set $outnum = 0
tools/samtools/sam_pileup.xml
+1 -1
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@@ -1,7 +1,7 @@
<tool id="sam_pileup" name="Generate pileup" version="1.1.1">
<description>from BAM dataset</description>
<requirements>
<requirement type="package">samtools</requirement>
<requirement type="package" version="0.1.16">samtools</requirement>
</requirements>
<command interpreter="python">
sam_pileup.py