galaxy

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John Chilton fce2dd3ae8 Eliminate compressed datatype boiler plate.

Just annotate auto_compressed_types="gz|bz2|gz,bz2" in datatypes_conf.xml and get for free:

- The compressed datatype with correct extension, no need to have a class definition.
- Converters from the compressed datatype to the uncompressed datatype.
- A sniffer in the correct order.

Additionally, the hacky way we were controlling whether types would be sniffed or not has been improved. This can now be set in the datatypes_conf.xml file or read from a global Galaxy configuration option for options that haven't been explicitly set on a per-datatype basis in the configuration (sniff_compressed_dynamic_datatypes_default).

This should simplify all future datatypes moving in this direction and introduces the possibility of also just loading them in dynamically as needed based on what the tools in the tool panel annotate for inputs and outputs. See a tool with an input of type "genbank.gz" should be enough to trigger this someday I hope.

2018-04-19 14:10:33 -04:00

tool-data

Add test tool demontrating filtering selections based on dbkey.

2015-07-31 11:09:45 +01:00

tools

Eliminate compressed datatype boiler plate.

2018-04-19 14:10:33 -04:00

webhooks

simplify Webhooks' structure

2018-02-01 12:18:01 -05:00

__init__.py

New functional test harness. Update to recent nose. No longer rely on nose to manage the embedded web server (this is not done in functional_tests.py). Log page contents to a temporary file on check_page_for_string error.