Daniel Blankenberg a3b137d94b Extracting Genomic DNA can now result in an interval file with the ...

sequence appended as a new column.

2007-09-25 16:12:37 +00:00

..

phastOdds

Enhanced sort tool to use columnlist tool parameter, altered functional test to work with new version. Some other miscellaneous cleanup.

2007-09-17 20:48:59 +00:00

extract_GFF_Features_code.py

Adding new tool "Extract features from GFF file" under Fetch Sequences and Alignments section.

2007-06-19 14:04:41 +00:00

extract_GFF_Features.py

Cleanup: removing the cookbook package. Bunch and odict move to galaxy.util, tools

2007-07-31 15:45:59 +00:00

extract_GFF_Features.xml

More interface work for converters and feature extractors

2007-07-17 03:13:40 +00:00

extractAxt_wrapper_code.py

Moving james-wsgi branch to new trunk.

2006-11-15 16:28:21 +00:00

extractAxt_wrapper.pl

Remove last references to /depot/data1/cache.

2007-01-03 19:36:07 +00:00

extractAxt_wrapper.xml

Few of cosmetic changes

2007-05-25 20:40:15 +00:00

fasta-subseq-wrapper_code.py

Extracting Genomic DNA can now result in an interval file with the

2007-09-25 16:12:37 +00:00

fasta-subseq-wrapper.pl

Extracting Genomic DNA can now result in an interval file with the

2007-09-25 16:12:37 +00:00

fasta-subseq-wrapper.xml

Extracting Genomic DNA can now result in an interval file with the

2007-09-25 16:12:37 +00:00

genebed_maf_to_fasta_code.py

Species are no longer selected by default in MAF tools.

2007-09-21 14:55:06 +00:00

genebed_maf_to_fasta_user_code.py

Add pairwise maf extractor for converted AXTs, add

2007-05-16 18:42:34 +00:00

genebed_maf_to_fasta_user.py

Improve error message on maf tools, telling users where to go to set

2007-09-20 20:39:05 +00:00

genebed_maf_to_fasta_user.xml

Add Gene bed and maf to fasta tool.

2007-04-10 16:11:04 +00:00

genebed_maf_to_fasta.py

Improve error message on maf tools, telling users where to go to set

2007-09-20 20:39:05 +00:00

genebed_maf_to_fasta.xml

MAF tools are no longer duplicated for different sources, i.e. locally cached and user histories.

2007-07-31 18:35:48 +00:00

interval2maf_code.py

Better Error messages for users that try to run MAF tools on unavailable locally cached alignments.

2007-08-01 15:09:45 +00:00

interval2maf_pairwise_code.py

Better Error messages for users that try to run MAF tools on unavailable locally cached alignments.

2007-08-01 15:09:45 +00:00

interval2maf_pairwise.py

Improve error message on maf tools, telling users where to go to set

2007-09-20 20:39:05 +00:00

interval2maf_pairwise.xml

MAF tools are no longer duplicated for different sources, i.e. locally cached and user histories.

2007-07-31 18:35:48 +00:00

interval2maf.py

Improve error message on maf tools, telling users where to go to set

2007-09-20 20:39:05 +00:00

interval2maf.xml

Update MAF tools to use species as provided by metadata. Selecting parameters for these tools should be significantly faster.

2007-08-30 18:06:39 +00:00

interval_maf_to_merged_fasta_code.py

Species are no longer selected by default in MAF tools.

2007-09-21 14:55:06 +00:00

interval_maf_to_merged_fasta_user_code.py

Add pairwise maf extractor for converted AXTs, add

2007-05-16 18:42:34 +00:00

interval_maf_to_merged_fasta_user.py

Improve error message on maf tools, telling users where to go to set

2007-09-20 20:39:05 +00:00

interval_maf_to_merged_fasta_user.xml

change the name of output file of interval_maf_to_merged_fasta_user.xml

2007-07-19 20:03:45 +00:00

interval_maf_to_merged_fasta.py

Improve error message on maf tools, telling users where to go to set

2007-09-20 20:39:05 +00:00

interval_maf_to_merged_fasta.xml

Allow tests to work with conditional statements.

2007-09-06 17:51:29 +00:00

twoBitToFa

Tool to extract genomic DNA from unassembled sequences.

2007-05-29 19:50:25 +00:00

twoBitToFa_wrapper.py

Corrected typo in tool name and enhanced error messages.

2007-05-30 17:33:20 +00:00

twoBitToFa_wrapper.xml

More interface changes and updates to tool_conf.xml.main and tool_conf.xml.sample

2007-07-17 15:17:11 +00:00

user_interval2maf.py

Improve error message on maf tools, telling users where to go to set

2007-09-20 20:39:05 +00:00

user_interval2maf.xml

Fixing typos

2007-07-18 20:35:03 +00:00