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Improve error message on maf tools, telling users where to go to set

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their genome build.
This commit is contained in:
Daniel Blankenberg
2007-09-20 20:39:05 +00:00
parent 74d224ef71
commit 1047e7728e
7 changed files with 7 additions and 7 deletions
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tools/extract/genebed_maf_to_fasta.py
+1 -1
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@@ -82,7 +82,7 @@ def __main__():
#ensure dbkey is set
if dbkey == "?":
print >>sys.stderr, "You must specify a proper build in order to extract alignments."
print >>sys.stderr, "You must specify a proper build in order to extract alignments. You can specify your genome build by clicking on the pencil icon associated with your interval file."
sys.exit()
output = open(output_file, "w");
tools/extract/genebed_maf_to_fasta_user.py
+1 -1
View File
@@ -84,7 +84,7 @@ def __main__():
#ensure dbkey is set
if dbkey == "?":
print >>sys.stderr, "You must specify a proper build in order to extract alignments."
print >>sys.stderr, "You must specify a proper build in order to extract alignments. You can specify your genome build by clicking on the pencil icon associated with your interval file."
sys.exit()
output = open(output_file, "w");
tools/extract/interval2maf.py
+1 -1
View File
@@ -121,7 +121,7 @@ def __main__():
sys.exit()
if dbkey == "?":
print >>sys.stderr, "You must specify a proper build in order to extract alignments."
print >>sys.stderr, "You must specify a proper build in order to extract alignments. You can specify your genome build by clicking on the pencil icon associated with your interval file."
sys.exit()
tools/extract/interval2maf_pairwise.py
+1 -1
View File
@@ -119,7 +119,7 @@ def __main__():
sys.exit()
if dbkey == "?":
print >>sys.stderr, "You must specify a proper build in order to extract alignments."
print >>sys.stderr, "You must specify a proper build in order to extract alignments. You can specify your genome build by clicking on the pencil icon associated with your interval file."
sys.exit()
tools/extract/interval_maf_to_merged_fasta.py
+1 -1
View File
@@ -86,7 +86,7 @@ def __main__():
#ensure dbkey is set
if dbkey == "?":
print >>sys.stderr, "You must specify a proper build in order to extract alignments."
print >>sys.stderr, "You must specify a proper build in order to extract alignments. You can specify your genome build by clicking on the pencil icon associated with your interval file."
sys.exit()
output = open(output_file, "w");
tools/extract/interval_maf_to_merged_fasta_user.py
+1 -1
View File
@@ -89,7 +89,7 @@ def __main__():
#ensure dbkey is set
if dbkey == "?":
print >>sys.stderr, "You must specify a proper build in order to extract alignments."
print >>sys.stderr, "You must specify a proper build in order to extract alignments. You can specify your genome build by clicking on the pencil icon associated with your interval file."
sys.exit()
output = open(output_file, "w");
tools/extract/user_interval2maf.py
+1 -1
View File
@@ -82,7 +82,7 @@ def __main__():
sys.exit()
if dbkey == "?":
print >>sys.stderr, "You must specify a proper build in order to extract alignments."
print >>sys.stderr, "You must specify a proper build in order to extract alignments. You can specify your genome build by clicking on the pencil icon associated with your interval file."
sys.exit()
#index maf for use here