mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 13:50:20 +08:00
76 lines
2.2 KiB
Bash
Executable File
76 lines
2.2 KiB
Bash
Executable File
#!/bin/sh
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cd `dirname $0`
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python ./scripts/check_python.py
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[ $? -ne 0 ] && exit 1
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SAMPLES="
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community_wsgi.ini.sample
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datatypes_conf.xml.sample
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external_service_types_conf.xml.sample
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migrated_tools_conf.xml.sample
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reports_wsgi.ini.sample
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shed_tool_conf.xml.sample
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tool_conf.xml.sample
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tool_data_table_conf.xml.sample
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tool_sheds_conf.xml.sample
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openid_conf.xml.sample
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universe_wsgi.ini.sample
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tool-data/shared/ncbi/builds.txt.sample
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tool-data/shared/ensembl/builds.txt.sample
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tool-data/shared/ucsc/builds.txt.sample
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tool-data/shared/ucsc/publicbuilds.txt.sample
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tool-data/shared/igv/igv_build_sites.txt.sample
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tool-data/shared/rviewer/rviewer_build_sites.txt.sample
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tool-data/*.sample
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static/welcome.html.sample
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"
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# Create any missing config/location files
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for sample in $SAMPLES; do
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file=`echo $sample | sed -e 's/\.sample$//'`
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if [ ! -f "$file" -a -f "$sample" ]; then
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echo "Initializing $file from `basename $sample`"
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cp $sample $file
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fi
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done
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if [ -n "$GALAXY_UNIVERSE_CONFIG_DIR" ]; then
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python ./scripts/build_universe_config.py "$GALAXY_UNIVERSE_CONFIG_DIR"
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fi
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# explicitly attempt to fetch eggs before running
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FETCH_EGGS=1
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for arg in "$@"; do
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[ "$arg" = "--stop-daemon" ] && FETCH_EGGS=0; break
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done
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if [ $FETCH_EGGS -eq 1 ]; then
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python ./scripts/check_eggs.py -q
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if [ $? -ne 0 ]; then
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echo "Some eggs are out of date, attempting to fetch..."
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python ./scripts/fetch_eggs.py
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if [ $? -eq 0 ]; then
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echo "Fetch successful."
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else
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echo "Fetch failed."
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exit 1
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fi
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fi
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fi
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if [ -n "$GALAXY_RUN_ALL" ]; then
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servers=`sed -n 's/^\[server:\(.*\)\]/\1/ p' universe_wsgi.ini | xargs echo`
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daemon=`echo "$@" | grep -q daemon`
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if [ $? -ne 0 ]; then
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echo 'ERROR: $GALAXY_RUN_ALL cannot be used without the `--daemon` or `--stop-daemon` arguments to run.sh'
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exit 1
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fi
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for server in $servers; do
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echo "Handling $server with log file $server.log..."
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python ./scripts/paster.py serve universe_wsgi.ini --server-name=$server --pid-file=$server.pid --log-file=$server.log $@
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done
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else
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python ./scripts/paster.py serve universe_wsgi.ini $@
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fi
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