#!/bin/sh cd `dirname $0` python ./scripts/check_python.py [ $? -ne 0 ] && exit 1 SAMPLES=" community_wsgi.ini.sample datatypes_conf.xml.sample external_service_types_conf.xml.sample migrated_tools_conf.xml.sample reports_wsgi.ini.sample shed_tool_conf.xml.sample tool_conf.xml.sample tool_data_table_conf.xml.sample tool_sheds_conf.xml.sample openid_conf.xml.sample universe_wsgi.ini.sample tool-data/shared/ncbi/builds.txt.sample tool-data/shared/ensembl/builds.txt.sample tool-data/shared/ucsc/builds.txt.sample tool-data/shared/ucsc/publicbuilds.txt.sample tool-data/shared/igv/igv_build_sites.txt.sample tool-data/shared/rviewer/rviewer_build_sites.txt.sample tool-data/*.sample static/welcome.html.sample " # Create any missing config/location files for sample in $SAMPLES; do file=`echo $sample | sed -e 's/\.sample$//'` if [ ! -f "$file" -a -f "$sample" ]; then echo "Initializing $file from `basename $sample`" cp $sample $file fi done if [ -n "$GALAXY_UNIVERSE_CONFIG_DIR" ]; then python ./scripts/build_universe_config.py "$GALAXY_UNIVERSE_CONFIG_DIR" fi # explicitly attempt to fetch eggs before running FETCH_EGGS=1 for arg in "$@"; do [ "$arg" = "--stop-daemon" ] && FETCH_EGGS=0; break done if [ $FETCH_EGGS -eq 1 ]; then python ./scripts/check_eggs.py -q if [ $? -ne 0 ]; then echo "Some eggs are out of date, attempting to fetch..." python ./scripts/fetch_eggs.py if [ $? -eq 0 ]; then echo "Fetch successful." else echo "Fetch failed." exit 1 fi fi fi if [ -n "$GALAXY_RUN_ALL" ]; then servers=`sed -n 's/^\[server:\(.*\)\]/\1/ p' universe_wsgi.ini | xargs echo` daemon=`echo "$@" | grep -q daemon` if [ $? -ne 0 ]; then echo 'ERROR: $GALAXY_RUN_ALL cannot be used without the `--daemon` or `--stop-daemon` arguments to run.sh' exit 1 fi for server in $servers; do echo "Handling $server with log file $server.log..." python ./scripts/paster.py serve universe_wsgi.ini --server-name=$server --pid-file=$server.pid --log-file=$server.log $@ done else python ./scripts/paster.py serve universe_wsgi.ini $@ fi