galaxy

admin

First pass at Galaxy sample tracking re-write. Highlights: lots of code cleanup with several not-needed methods removed, many mthods and mako templates have been renamed clarify what they do, all object ids are now encoded, methods in the requests_common controller that include features requiring an admin user are now secured. More work is needed in the requests_admin controller which will be in the next commit.

2010-10-11 16:35:57 -04:00

dataset

New config option to prevent Galaxy from retrying set_meta internally if it fails externally, and accompanying code to allow users to retry set_meta upon failure.

2010-09-02 10:22:51 -04:00

genetrack

Added the missing "invalid.html" for GeneTrack.

2009-01-29 11:11:15 -05:00

history

Make published items set the "Shared Data" tab as the active tab

2010-10-07 15:33:54 -04:00

library

First pass at Galaxy sample tracking re-write. Highlights: lots of code cleanup with several not-needed methods removed, many mthods and mako templates have been renamed clarify what they do, all object ids are now encoded, methods in the requests_common controller that include features requiring an admin user are now secured. More work is needed in the requests_admin controller which will be in the next commit.

2010-10-11 16:35:57 -04:00

mobile

New config option to prevent Galaxy from retrying set_meta internally if it fails externally, and accompanying code to allow users to retry set_meta upon failure.

2010-09-02 10:22:51 -04:00

page

Make published items set the "Shared Data" tab as the active tab

2010-10-07 15:33:54 -04:00

requests

sample_tracking bug fixes:

2010-10-12 08:37:39 -04:00

root

Use a job to export a history to an archive file. Exporting a history is now enabled in the history options panel, but importing a history is not yet a job and remains disabled. When a user exports a history, a link is provided that can be used to retrieve the archive or, in the future, moved to another Galaxy instance.

2010-09-28 11:40:19 -04:00

tracks

trackster: Can now reorder tracks inline. Put cancel button in modal dialogs to the left instead of right

2010-10-06 13:07:45 -04:00

user

Refactored refresh_on_change javascript code to run in galaxy.base when the page is loaded. Fixed bug with autocomplete_select: when switching from a value within refresh_on_change_values to a value outside of it, the page did not refresh. Removed duplicate code from templates.

2010-10-01 16:20:34 -04:00

visualization

Make published items set the "Shared Data" tab as the active tab

2010-10-07 15:33:54 -04:00

webapps

Re-fix issue from 384c809db93e: show items in user menu when user is remote. Contributed by JJ and Ry4an Brase.

2010-10-11 17:07:59 -04:00

workflow

Make published items set the "Shared Data" tab as the active tab

2010-10-07 15:33:54 -04:00

base_panels.mako

Display the average rating for each tool the tool grid in the Galaxy Tool Shed. Add a common method for rendering the star rating, and clean up template code by using this new common method.

2010-08-30 12:54:58 -04:00

base.mako

Add 'metas()' %def to base.mako, to allow subclassing templates to declare additional <meta/> tags.

2010-03-12 12:03:25 -05:00

community_rating.mako

Add CommunityRatingColumn to grid infrastructure and add 'Community Rating' columns to published item grids. Community ratings are computed on demand for now, but this may need to change in the future.

2010-09-08 11:43:25 -04:00

display_base.mako

Make published items set the "Shared Data" tab as the active tab

2010-10-07 15:33:54 -04:00

display_common.mako

lims: changed the name 'request type' to 'sequencer configuration' in UI. In the code it is still called request_type.

2010-09-03 09:20:52 -04:00

embed_base.mako

Fixes to item embedding in pages. In particular, fixed the editor color changes that were occurring when moving the cursor through embedded items.

2010-03-16 12:00:10 -04:00

export_base.mako

(1) Added templates for downloading/exporting objects and (2) created 'Download or Export' option for workflows that enables users to download a workflow to a file or export a workflow to myExperiment.

2010-09-10 17:37:13 -04:00

form.mako

Add history import and export functionality to Galaxy. Options for exporting the current history to a file or importing a history from a file are now listed in the history options menu. Also modified the form builder to support file inputs.

2010-06-03 12:17:34 -04:00

grid_base_async.mako

Fix the recentrly introduced grid filter / search bug. Revert the recently introduced grid filter_params hack for generating links since we now use a different approach to rendering links. Convert a few more 'message_type' params to be 'status' instead. Many fixes for the community space app.

2010-05-04 14:21:21 -04:00

grid_base.mako

Make published items set the "Shared Data" tab as the active tab

2010-10-07 15:33:54 -04:00

grid_common.mako

New style for search boxes in grids. Grid items will no longer show outline when hovered upon if there are no actions to be performed.

2010-10-05 18:21:31 -04:00

ind_share_base.mako

Enhancements and fixes for sharing framework: (a) sharing/publishing webpages can now be displayed in frames; (b) sharing webpages can display messages; (c) workflow sharing highlights correct tab; (d) history sharing for individual users now uses sharing framework; (e) item sharing with individual users now uses common template.

2010-08-16 17:05:59 -04:00

message.mako

Fix form.mako and message.mako to use the correct webapp version of base_panels.mako.

2010-05-28 09:51:57 -04:00

no_access.mako

You can now require that users log in to use Galaxy. The sample config is way different but it's only because I cleaned it up a bit. The only new options are require_login/allow_user_creation.

2008-11-20 15:14:47 -05:00

panels.mako

Decouple the masthead from base_panels.mako.

2010-03-31 13:11:05 -04:00

sharing_base.mako

Make published items set the "Shared Data" tab as the active tab

2010-10-07 15:33:54 -04:00

tagging_common.mako

- Refactored tagging/autocomplete JS, fixing bugs regarding leaving the tagging box

2010-09-17 17:51:11 -04:00

tool_executed.mako

Typos 'succesfully' -> 'successfully' fixed in tool_executed.mako

2010-09-15 17:11:10 -04:00

tool_form.mako

Fix functional tests as they think dynamically created jQuery elements are real

2010-10-04 17:22:58 -04:00